Pinned Repositories
agora
It's a methods repository!
another-test-service
bcbio_validation_workflows
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
CGP-Somatic-Docker
Dockerised and simplified version of SeqWare-CGP-SomaticCore
demo-qc
docker
Chef Cookbook for Docker
dockstore
Our VM/Docker sharing infrastructure and management component
dockstore-biobambam2
Dockstore implementation of bamtofastq (biobambam2)
dockstore-cgpmap
Mapping using PCAP
dockstore-cgpwxs
Dockstore implementation of CGP core WXS analysis
garyluu's Repositories
garyluu/another-test-service
garyluu/bcbio_validation_workflows
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
garyluu/CGP-Somatic-Docker
Dockerised and simplified version of SeqWare-CGP-SomaticCore
garyluu/demo-qc
garyluu/dockstore
Our VM/Docker sharing infrastructure and management component
garyluu/dockstore-cli
Command-line interface to dockstore, split out from main repo in version 1.8.0
garyluu/dockstore-galaxy-interface
Dockstore Plugin for Galaxy Workflows
garyluu/dockstore-ui2
A repo for migrating dockstore-ui from AngularJS to Angular2 and implementing search
garyluu/example_cwl_workflow
An example workflow using CWL
garyluu/flow-blast-hml
nextflow pipeline for extracting, blasting and validating all consensus sequences found in an HML file.
garyluu/ga4gh_challenge
Workflow for GA4GH/DREAM challenge (phase 2)
garyluu/galaxy-workflow-dockstore-example-2
garyluu/ghapps-single-workflow
garyluu/hello_world
garyluu/lambda
Till we find a better solution, backup and document AWS lambdas
garyluu/md5sum-checker
garyluu/Metaphlan-ISBCGC
garyluu/one-workflow-many-ways
Implementing bamqc over and over again
garyluu/pipeline-builder
Pipeline Builder is a JavaScript library for visualizing and constructing bioinformatics workflows, using Workflow Description Language (WDL)
garyluu/Seqware-BWA-Workflow
This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
garyluu/simulate_phenotypes
Code for simulating phenotypes
garyluu/skylab
Secondary analysis pipelines
garyluu/swagger-java-quay-client
garyluu/synapse-orchestrator
Synapse-based orchestrator for GA4GH workflows
garyluu/test
garyluu/test-workflows-and-tools
garyluu/testWorkflow
garyluu/tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
garyluu/toolbox
Repository for various helper tools used by supported workflows
garyluu/workflow-dockstore-yml
A repo that includes .dockstore.yml