Pinned Repositories
Algorithms-Explanation
All Algorithms explained in simple language with examples and links to their implementation in various programming languages and other required resources.
AMR-Bio-Africa-2022
ancient_trichuris
Analysis of ancient and modern Trichuris trichiuria in collaboration with Martin Soe and Peter Nejum
assembly
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-ml-courses
Awesome free machine learning and AI courses with video lectures.
BayesianInference_practicals
bioinfor-python
bioinformatics
bioinformatics
Algorithms to process genetic sequences in order to get relevant information from them.
bioinformatics-workbook
Bioinformatics Workbook repository
gashanjakim's Repositories
gashanjakim/AMR-Bio-Africa-2022
gashanjakim/ancient_trichuris
Analysis of ancient and modern Trichuris trichiuria in collaboration with Martin Soe and Peter Nejum
gashanjakim/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
gashanjakim/BayesianInference_practicals
gashanjakim/bioinformaticsdotca.github.io
Repo for student website
gashanjakim/cercopithifilaria_johnstoni
gashanjakim/chip_seq
gashanjakim/DS-I_Africa_Repeats_Workshop2024
This is the first iteration of the Human Genome Expansions Analysis workshop.
gashanjakim/FastQ-Screen
Detecting contamination in NGS data and multi-species analysis
gashanjakim/genomescope2.0
Reference-free profiling of polyploid genomes
gashanjakim/handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
gashanjakim/Helminths_2021
gashanjakim/Journal_Club
gashanjakim/machine_learning_complete
A comprehensive repository containing 30+ notebooks on learning machine learning!
gashanjakim/MachineLearning_notes
Machine learning and deep learning resources
gashanjakim/MARS-Update-Pipeline
gashanjakim/master
A machine learning course using Python, Jupyter Notebooks, and OpenML
gashanjakim/MICB405
Tutorials and project information for MICB405
gashanjakim/ml-genomics-resources
Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)
gashanjakim/ml-pitfalls
Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
gashanjakim/NGS_Bio_Africa
gashanjakim/NGSBioAfrica_Module-1_-Intro-to-Unix-Linux
gashanjakim/OrthoFinder
Phylogenetic orthology inference for comparative genomics
gashanjakim/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
gashanjakim/read_alignment
gashanjakim/rstudio-feedstock
A conda-smithy repository for rstudio.
gashanjakim/Seminar_Presentations
gashanjakim/ViralBioinfLAC2022
The repository for the Viral Genomics and Bioinformatics 2022 course
gashanjakim/wtac_helminths_2019
Repository for data and workshop materials for the WTAC Helminths course for 2019
gashanjakim/WWPG_2022
Working with Pathogen Genomes 2022