gatoniel/merge-stardist-masks

Issues

• Proivde StarDist-like example notebooks

  #255 opened 2 years ago by erjel
  1

• Add coverage to data_3d and model_3d

  #278 opened 2 years ago by gatoniel
  0

• Solve new mypy issues

  #281 opened 2 years ago by gatoniel
  0

• Add tests for numba and with typeguard

  #268 opened 2 years ago by gatoniel
  2

• Add adaptable search window so that no_slicing option is always enabled but with less computational overhead.

  #263 opened 2 years ago by gatoniel
  0

• Refactor the naive_fusion functions by show_overlaps and respect_probs

  #221 opened 2 years ago by gatoniel
  2

• Do not just overwrite already set pixels

  #97 opened 2 years ago by gatoniel
  0

• show_overlaps and respect_probs as additional output instead of only output

  #101 opened 2 years ago by gatoniel
  0

• Wanted: Add a simple utility function to determine optimal threshold / max_full_overlaps value for dataset

  #100 opened 2 years ago by gatoniel
  0

• add check for overlaps

  #59 opened 2 years ago by gatoniel
  1

• allow to manually set the number of full overlaps

  #60 opened 3 years ago by gatoniel
  0

• Optimization: set probs to -1 after full_overlap

  #61 opened 3 years ago by gatoniel
  0

• Use multithreading for search of single objects

  #11 opened 3 years ago by gatoniel
  1

• inflate_array generates high memory footprint

  #35 opened 3 years ago by gatoniel
  0

• Add 2d functionality

  #15 opened 3 years ago by gatoniel
  1

• Abbruch Kondition der Overlaps

  #9 opened 3 years ago by gatoniel
  2

• Add unit tests

  #10 opened 3 years ago by gatoniel
  1