/BulkRnaseqDE

Primary LanguageR

bkRnaseqDE: The bulk RNAseq differential expression analysis pipeline

Overview:

An open source and fully customized pipeline that:

  • Performs DE analysis between conditions
  • Run on an HPCC cluster (default) or on a computer/server
  • Remove unwanted variation using RUVseq
  • Run differential expression analysis with DESeq2
  • Draw differential expression heatmaps
  • Add gene annotation to results file
  • Provides a detailed summary of the analysis in the form of diagnosis plots:
  • Detailed logs of every steps

Description

Coming soon

Citation:

  • Gaurav Jain, BulkRnaseqDE: Differential gene expression analysis pipeline for bulk RNAseq experiments, (2018), GitHub repository, https://github.com/gauravj49/BulkRnaseqDE

  • BibTeX entry:

@misc{gauravj49,
  author = {Jain, Gaurav},
  title = {BulkRnaseqDE: Differential gene expression analysis pipeline for bulk RNAseq experiments},
  year = {2018},
  publisher = {GitHub},
  journal = {GitHub repository},
  howpublished = {\url{https://github.com/gauravj49/BulkRnaseqDE}},
  commit = {b8d89be43b8685d023199605883aa39ae5c88f55}
}