Pinned Repositories
biofinfo-book
Book-template
bulk-rnaseq-analysis-multiple-datasets-
A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
CFF
CFF_01
covid_multiomics_mar2022
E-MTAB-6141_heatmapcomplex
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
galaxy-workflows
Copied (from statonlab / galaxy-workflows)
gautam-lk
Config files for my GitHub profile.
gautam-lk.github.io
gautam-lk's Repositories
gautam-lk/biofinfo-book
gautam-lk/Book-template
gautam-lk/bulk-rnaseq-analysis-multiple-datasets-
A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
gautam-lk/CFF
CFF_01
gautam-lk/covid_multiomics_mar2022
gautam-lk/E-MTAB-6141_heatmapcomplex
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
gautam-lk/EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
gautam-lk/galaxy-workflows
Copied (from statonlab / galaxy-workflows)
gautam-lk/gautam-lk
Config files for my GitHub profile.
gautam-lk/gautam-lk.github.io
gautam-lk/host
gautam-lk/LiquidBrain_Scripts
This folder ultimately should contains all my project shown in my Youtube channel.
gautam-lk/lkgautam
gautam-lk/Lung_CoO-copied-
gautam-lk/Normal-and-IPF-lung
gautam-lk/R-scripts-graphing-statistics
My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq
gautam-lk/RNA-seq-analysis
Codes (~Arindam Ghosh)
gautam-lk/RNA-seq-downstream-analysis
Arabidopsis RNA_-seq downstream analysis shiny app
gautam-lk/RSubRead_Deseq2
A short guide on how to extract DEGs (differential expressed genes) from Fastq file using a combination of Rsubred and Deseq2
gautam-lk/RyanLab_RBL2
Scripts and data files used for RBL2 Manuscript (Quiroz et. al. 2023): Under communication. (Ryan Lab, University of Iowa)
gautam-lk/sanbomics_scripts
scripts and notebooks from sanbomics
gautam-lk/website
My academic profile