gavinf97

Bash_scripts

Custom Bash Shell scripts for use with AntiSMASH and Biosynthetic MetaSpades data outputs (fasta/GenBank). Scripts carry out file management, data parsing and data QC

certs_mailer

groupnextflow

Hi-C Nextflow script and Singularity container for a collaborative group MSc project.

Nextflow_AntiSMASH

Custom Nextflow scripts for microbiome assembly and AntiSMASH BGC analyses. Based around microbiome assemblers: Megahit & MetaSpades

Nextflow_Snakemake_scripts

Python_GC_distribution_Script

Python script for taking in Genbank accession codes for organsims genomes and runs an analsyis to determine if there is a link between gene length distibutions and the size of the organisms genomes

R_shiny

R-shiny app for processing differential gene expression data

thesisreal

My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.

gavinf97/Bash_scripts

Custom Bash Shell scripts for use with AntiSMASH and Biosynthetic MetaSpades data outputs (fasta/GenBank). Scripts carry out file management, data parsing and data QC

gavinf97/certs_mailer

gavinf97/groupnextflow

Hi-C Nextflow script and Singularity container for a collaborative group MSc project.

gavinf97/Nextflow_AntiSMASH

Custom Nextflow scripts for microbiome assembly and AntiSMASH BGC analyses. Based around microbiome assemblers: Megahit & MetaSpades

gavinf97/Nextflow_Snakemake_scripts

gavinf97/Python_GC_distribution_Script

Python script for taking in Genbank accession codes for organsims genomes and runs an analsyis to determine if there is a link between gene length distibutions and the size of the organisms genomes

gavinf97/R_shiny

R-shiny app for processing differential gene expression data

gavinf97/thesisreal

My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.