gavinha

Fred Hutchinson Cancer Research Center

Pinned Repositories

ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Language:R156 20 12785
tfcb_2021
Tool for Computational Biology MCB 536
Language:Jupyter Notebook7 9 016
tfcb_2022
Course website for MCB 536 Tools for Computational Biology
Language:Jupyter Notebook7 9 021
tfcb_2019
class materials for MCB517A through UW/Fred Hutch
Language:JavaScript10 7 1310
gavinha.github.io
00
Keraon
A tool for estimating heterogenous phenotype fractions from ctDNA features
Language:Python10
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Language:R92 3 8236
TitanCNA-utils
TitanCNA utility scripts
Language:R2 1 00
ichorCNA_offtarget
Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.
Language:R54
SV_10X_analysis
Structural variation analysis of 10X Genomics linked-read data
Language:R54

gavinha's Repositories

gavinha/TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Language:R92 3 8236
gavinha/TitanCNA-utils
TitanCNA utility scripts
Language:R2 1 00
gavinha/Keraon
A tool for estimating heterogenous phenotype fractions from ctDNA features
Language:Python10
gavinha/gavinha.github.io
00