gbnci/cnaviz

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data

This project was bootstrapped with Create React App.

Running CNAViz

Click here to run the latest version of CNAViz.

Running CNAViz on localhost

1. Run yarn install which will download all the required packages. A node_modules folder and yarn.lock file should be in the directory
2. Run yarn run start
3. Open https://localhost:3000 in the browser

Data Prepartion

Click here for the full tutorial on preparing data for CNAViz, obtaining a HATCHet, ASCAT or GMMHMM clustering, or performing downstream copy-number calling with HATCHet.

Tutorial

Click here to view a CNAViz tutorial.

Screencasts and Data Analysis

Screencasts, data and analysis files are available on the cnaviz-paper repo.