AF sometimes 1
Closed this issue · 3 comments
renhamm commented
To run construct with alt allele frequency at the population level while being consistent across populations, sometimes the frequency is 1.
This throws an error. Is there any way to get around that?
gbradburd commented
Hm I'm not sure I follow the situation. Is the frequency of the counted allele 1 across all your samples? If so, that shouldn't throw an error but it will get dropped when the frequency data are being processed (inside conStruct:::process.freq.data). What error are you getting?
gbradburd commented
Hi Lauren,
Just doing some book-keeping here. Are you ok to close this thread? Or is the issue unresolved?
renhamm commented
You can close it for now! We are working on realigning our data to a new
reference so it’ll be a while before I get around to rerunning everything
through the ConStruct pipeline.
Thanks,
Ren
…On Fri, Jun 2, 2023 at 7:01 AM Gideon ***@***.***> wrote:
Hi Lauren,
Just doing some book-keeping here. Are you ok to close this thread? Or is
the issue unresolved?
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