gbradburd/conStruct

Issues

• Covariance figure blank

  #69 opened 5 months ago by ruthrivkin
  7

• x.validation failed : Error in { : task 1 failed - "need finite 'xlim' values"

  #64 opened 5 months ago by monicafahey
  12

• Independently standardize and write

  #68 opened 7 months ago by joannarifkin
  10

• (Non-Issue) Question about parallelization in cross-validation analysis...

  #36 opened 3 years ago by Selachophile
  10

• rdist rounding errors

  #66 opened 8 months ago by joannarifkin
  6

• In cross-validation, two best-performing replicates of the same model show very different ancestry

  #59 opened 8 months ago by Dahn-YoungDong
  6

• Using multiallelic data

  #61 opened 8 months ago by mhopken
  3

• Error: greater number of loci than there are samples

  #67 opened 8 months ago by mjgarrett
  2

• large difference across chains

  #65 opened 10 months ago by renhamm
  2

• Error: Incorrect number of subscripts

  #28 opened 4 years ago by lesserof2weevils
  8

• data.block not saved from conStruct run

  #63 opened 10 months ago by renhamm
  2

• only 250 iterations are saved on construct analysis regardless of n.iter value

  #62 opened 10 months ago by monicafahey
  3

• Questions about results interpretation

  #54 opened a year ago by quinn-ca
  7

• trace plot limited to 250 iterations

  #16 opened 6 years ago by karajones
  4

• Cross-validation error: check.data.partitions.arg()

  #58 opened a year ago by sbreitbart
  2

• Is parallelization possible?

  #57 opened a year ago by sbreitbart
  2

• AF sometimes 1

  #55 opened a year ago by renhamm
  3

• High Rhat and ESS issues for K>1 with spatial analyses

  #56 opened a year ago by sbreitbart
  4

• View admixture proportions with associated sample names

  #53 opened a year ago by quinn-ca
  5

• structure2conStruct

  #15 opened 6 years ago by taniachavarria79
  25

• structure2conStruct error

  #51 opened 2 years ago by TannerMyers
  4

• Messy data with lots of errors..

  #50 opened 2 years ago by qthomas612
  3

• Most differentiated samples grouped in the same layer

  #48 opened 2 years ago by norabergman
  4

• Resuming an unfinished CV run?

  #40 opened 2 years ago by Selachophile
  12

• Make thin value adjustable?

  #47 opened 2 years ago by jbruxaux
  4

• error creating the vignettes in conStruct

  #46 opened 2 years ago by SergioB1983
  2

• Piemap plotting query

  #41 opened 2 years ago by kdm9
  7

• Chain Does Not Update from Iteration 1

  #44 opened 3 years ago by alexkrohn
  4

• Predictive accuracy increasing over all values of K from X-Val

  #45 opened 3 years ago by alex-sandercock
  4

• about the conStruct restlt

  #32 opened 3 years ago by guojingfang123
  2

• Installing covariance_fix issue

  #39 opened 4 years ago by lesserof2weevils
  8

• element that is not positive definite, xvalidation

  #38 opened 4 years ago by thomlmarshall
  3

• r-hat and Tail and Bulk Effective Sample Size Warnings

  #25 opened 4 years ago by thomlmarshall
  3

• Divergent transition warning

  #29 opened 4 years ago by dorseyb
  7

• Extracting all iterations from model.fit object

  #37 opened 4 years ago by twooldridge
  6

• Error freqs using RADseq data

  #35 opened 4 years ago by fcsalgado
  7

• covariance matrix is somehow not positive definite

  #33 opened 4 years ago by petrelharp
  4

• Error when running conStruct analysis

  #20 opened 5 years ago by cjenck
  18

• High Rhat and ESS issues for K>1 with spatial analysis

  #31 opened 4 years ago by crcardenas
  5

• Error when running conStruct: cannot open file 'test_trace.plots.chain_1.pdf'

  #30 opened 4 years ago by valualv
  5

• Error in check.data.partitions.covmats(args)

  #23 opened 4 years ago by rpercino
  8

• High Rhat across replicate runs

  #26 opened 4 years ago by gbradburd
  9

• conStruct analysis

  #27 opened 5 years ago by AnjumanArif
  4

• divergent transitions - change adapt_delta

  #17 opened 6 years ago by lmguzman
  5

• Error in validate.n.samples(data.block)

  #22 opened 5 years ago by rpercino
  3

• Comparing structure model runs

  #21 opened 5 years ago by lesserof2weevils
  11

• extract log-likelihoods from unfinished cross-validation

  #19 opened 5 years ago by capoony
  4

• Installation error

  #13 opened 6 years ago by zfuller5280
  5

• (pedantry, feel free to ignore) Large files in repo

  #11 opened 6 years ago by kdm9
  2

• Issue compiling stan models

  #8 opened 6 years ago by kdm9
  4