Pinned Repositories
artificial_tissue
A set of tools to generate virtual tissues with various possible computational representations
astec
Adaptative Segmentation and Tracking of Embryonic Cells (developer version, python code only)
card_suits
A Python script to generate a full deck of playing cards with 8 suits
cellcomplex
OpenAlea library implementing data structures and algorithms for the representation and manipulation of cellular complexes.
cgal_meshing
Generate coarse meshes of cell tissue from 3D segmented images using the CGAL library.
draco_stem
OpenAlea library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images : Dual Reconstruction by Adjacency Complex Optimization (DRACO) and SAM Tissue Enhanced Mesh (STEM)
imago_scripts
openalea
Official repository for OpenAlea and OpenAleaLab. Other repos in the openalea organization contain things like the website, documentation, projects, etc.
openalea-components
Openalea components
tissue_nukem_3d
An OpenAlea library for the detection and quantitative data extraction from microscopy images of cell nuclei
gcerutti's Repositories
gcerutti/card_suits
A Python script to generate a full deck of playing cards with 8 suits
gcerutti/artificial_tissue
A set of tools to generate virtual tissues with various possible computational representations
gcerutti/astec
Adaptative Segmentation and Tracking of Embryonic Cells (developer version, python code only)
gcerutti/cellcomplex
OpenAlea library implementing data structures and algorithms for the representation and manipulation of cellular complexes.
gcerutti/cgal_meshing
Generate coarse meshes of cell tissue from 3D segmented images using the CGAL library.
gcerutti/draco_stem
OpenAlea library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images : Dual Reconstruction by Adjacency Complex Optimization (DRACO) and SAM Tissue Enhanced Mesh (STEM)
gcerutti/imago_scripts
gcerutti/openalea
Official repository for OpenAlea and OpenAleaLab. Other repos in the openalea organization contain things like the website, documentation, projects, etc.
gcerutti/openalea-components
Openalea components
gcerutti/tissue_nukem_3d
An OpenAlea library for the detection and quantitative data extraction from microscopy images of cell nuclei
gcerutti/plantlab
OpenAleaLab extension "plant"
gcerutti/projet_modelisation
gcerutti/sam_segmentation_curvature
gcerutti/sam_spaghetti
gcerutti/SamMaps
gcerutti/SmartRoot_pipeline
gcerutti/timagetk
3D and 2D Image processing algorithms in Python for tissues
gcerutti/tissue_analysis
An OpenAlea library providing image analysis tools to extract quantitative information from 3D segmented tissue images
gcerutti/tissuelab
gcerutti/villagers_tree
A python package to generate a tree visualization of Villagers cards.