gchatt

gchatt's Stars

• schnitzer-lab/EXTRACT-public

  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.

  Language:MATLAB6317

• kohth/cilds

  Dimensionality reduction of calcium-imaged neuronal population activity

  Language:MATLAB123

• openmind-consortium/Analysis-rcs-data

  Selection of functions to extract .json raw data from Summit RCS device, transform it to .mat format and manipulate it for initial stages of data analysis.

  Language:MATLAB2422

• Farama-Foundation/Metaworld

  Collections of robotics environments geared towards benchmarking multi-task and meta reinforcement learning

  Language:Python1.3k273

• KordingLab/Neural_Decoding

  A python package that includes many methods for decoding neural activity

  Language:Jupyter Notebook429119

• vcg-uvic/viper

  Open-source code for VIPER -- Volume Invariant Position-based Elastic Rods

  Language:C++907105

• SurrealAI/surreal

  Open-Source Distributed Reinforcement Learning Framework by Stanford Vision and Learning Lab

  Language:Python48370

• paninski-lab/funimag

  Compression, denoising and demixing of functional imaging recordings

  Language:Python286

• CYHSM/DeepInsight

  A general framework for interpreting wide-band neural activity

  Language:Jupyter Notebook15632

• DeepLabCut/DLCutils

  Various scripts to support deeplabcut and what to do afterwards!

  Language:Jupyter Notebook14467

• flatironinstitute/CaImAn-MATLAB

  Complete Matlab pipeline for large scale calcium imaging data analysis

  Language:MATLAB252147

• YttriLab/B-SOID

  Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.

  Language:Python19053

• ANTsX/ANTs

  Advanced Normalization Tools (ANTs)

  Language:C++1.2k381

• SuperElastix/elastix

  Official elastix repository

  Language:C++482116

• GitwellAnyohub/Real_Sensible_Moseq

  Integrating Intel's Realsense cameras to the Moseq pipeline

  Language:Jupyter Notebook2615

• DeepLabCut/DeepLabCut

  Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

  Language:Python4.6k1.7k

• talmo/leap

  LEAP is now deprecated -- check out its successor SLEAP!

  Language:MATLAB20847