gcyuan

Pinned Repositories

CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Language:Python0 1 00
diHMM
Language:MATLAB14 7 56
diHMM-cpp
Improved implementation of diHMM in C++
Language:Makefile4 0 02
DWLS
Gene expression deconvolution using dampened weighted least squares
Language:R0 0 00
ECLAIR
Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.
Language:Python3 1 00
GiniClust
GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
Language:R1 1 00
Giotto
Single-cell spatial analysis toolbox
Language:R0 0 00
ONTraC
Ordered Niche Trajectory Construction
Language:Python0 0 00
PySCUBA
Python for Single-cell Clustering Using Bifurcation Analysis
Language:Python3 1 02
SCUBA
Language:MATLAB11 4 89

gcyuan's Repositories

gcyuan/diHMM
Language:MATLAB14 7 56
gcyuan/SCUBA
Language:MATLAB11 4 89
gcyuan/diHMM-cpp
Improved implementation of diHMM in C++
Language:Makefile4 0 02
gcyuan/ECLAIR
Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.
Language:Python3 1 00
gcyuan/PySCUBA
Python for Single-cell Clustering Using Bifurcation Analysis
Language:Python3 1 02
gcyuan/GiniClust
GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
Language:R1 1 00
gcyuan/CRISPResso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Language:Python0 1 00
gcyuan/CUT-RUNTools-2.0
Language:Shell00
gcyuan/DWLS
Gene expression deconvolution using dampened weighted least squares
Language:R0 0 00
gcyuan/GiniClust2
Language:R0 1 00
gcyuan/Giotto
Single-cell spatial analysis toolbox
Language:R0 0 00
gcyuan/ONTraC
Ordered Niche Trajectory Construction
Language:Python0 0 00
gcyuan/GiniClust3
Rare cell identification tool for single cell datasets
Language:Jupyter Notebook0 0
gcyuan/Giotto_ReadtheDocs
Language:R0 0
gcyuan/haystack_bio
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Language:HTML1 0
gcyuan/HubPredictor
HubPredictor is the R function to run Bayesian Additive Regression Trees (BART) model for predicting chromatin interaction hubs using histone marks information.
Language:R1 0
gcyuan/mim
Motif Independent Metric
Language:Python1 0
gcyuan/rescue
Bootstrap imputation for scRNAseq data
Language:R
gcyuan/STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Language:Jupyter Notebook0 0