Pinned Repositories
Apple_Replant_MSU
Code used in sequence and data analysis for MSU Apple Replant Project
April-26-2022
ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
BIO202
Biology 202 Course Website
co-occurrence
R scripts for performing co-occurrence analyses
growthcurver
Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whose parameters (the growth rate, the initial population size, and the carrying capacity) provide meaningful population-level information with straight-forward biological interpretation.
HubMicrobes
Data and Code for "Microbial hub taxa link host and abiotic factors to plant microbiome variation"
microbiome
microbiome R package
UMich_Bio201_F19
Main repository for Bio 201: Biostatistics of the human microbiome
gdanetzk's Repositories
gdanetzk/UMich_Bio201_F19
Main repository for Bio 201: Biostatistics of the human microbiome
gdanetzk/co-occurrence
R scripts for performing co-occurrence analyses
gdanetzk/growthcurver
Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whose parameters (the growth rate, the initial population size, and the carrying capacity) provide meaningful population-level information with straight-forward biological interpretation.
gdanetzk/HubMicrobes
Data and Code for "Microbial hub taxa link host and abiotic factors to plant microbiome variation"
gdanetzk/microbiome
microbiome R package
gdanetzk/Apple_Replant_MSU
Code used in sequence and data analysis for MSU Apple Replant Project
gdanetzk/April-26-2022
gdanetzk/ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
gdanetzk/barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
gdanetzk/BIO202
Biology 202 Course Website
gdanetzk/classifier
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
gdanetzk/compare_taxonomy
gdanetzk/CONSTAXv2
gdanetzk/dissertation
gdanetzk/Ea_genomes
Assembly and annotation of Erwinia amylovora genomes
gdanetzk/ITS-amplicon-pipeline
gdanetzk/Lab1
intro to R, RStudio, terminal
gdanetzk/Lunch_and_Learn
Chilvers Lab Lunch and Learn
gdanetzk/maliampi
Maximum Likelihood Amplicon Pipeline
gdanetzk/May-24-2022
gdanetzk/minimalR
gdanetzk/phage-flower-micro
Microbiome analysis of tree fruit flowers treated with phage
gdanetzk/phage_genomes
Assembly and annotation of bacteriophage genomes
gdanetzk/Prodigal
Prodigal Gene Prediction Software
gdanetzk/PSUChangingMicrobiomes_NMDC
Website for the NMDC Metadata Standards Workshop at the Changing Microbiomes Symposium 2022
gdanetzk/seqtk
Toolkit for processing sequences in FASTA/Q formats
gdanetzk/sturgeon_egg_microbiome
Repository of code and data associated with microbial community analysis of sturgeon eggs from Michigan