Pinned Repositories
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
cutadapt
Cutadapt removes adapter sequences from sequencing reads
dnaio
Efficiently read and write sequencing data from Python
dsub
Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
elprep
elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.
galaxytools
Galaxy Tool wrappers
nextflow.py
Python wrapper around Nextflow.
SpliceAI
A deep learning-based tool to identify splice variants
STaRparse
Tools for processing ExpansionHunter STR genotyping data
VariantDB_Challenge
Finding a scalable alternative to the VCF File for genomics analysis
geertvandeweyer's Repositories
geertvandeweyer/SpliceAI
A deep learning-based tool to identify splice variants
geertvandeweyer/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
geertvandeweyer/cutadapt
Cutadapt removes adapter sequences from sequencing reads
geertvandeweyer/dnaio
Efficiently read and write sequencing data from Python
geertvandeweyer/dsub
Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
geertvandeweyer/elprep
elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.
geertvandeweyer/galaxytools
Galaxy Tool wrappers
geertvandeweyer/nextflow.py
Python wrapper around Nextflow.
geertvandeweyer/STaRparse
Tools for processing ExpansionHunter STR genotyping data
geertvandeweyer/VariantDB_Challenge
Finding a scalable alternative to the VCF File for genomics analysis
geertvandeweyer/xopen
Open compressed files in Python