Pinned Repositories
BADAS
Collection of BADAS related resources
covid19
Variant Analysis Pipeline for COVID19
MAD
Minor Allele Detection Pipeline for SARS-CoV2
mpileupplugin
A JBrowse plugin for plotting allele fraction data
nf-workflows
Repository of NextFlow Workflows
r-notebooks
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
reform
Modify existing reference fasta and gff3/gtf files to include a new sequence
utils
variant-calling-pipeline
HPC based pipelines for variant calling using GATK
variant-calling-pipeline-gatk4
Variant Calling Pipeline Using GATK4 and Nextflow
gencorefacility's Repositories
gencorefacility/variant-calling-pipeline-gatk4
Variant Calling Pipeline Using GATK4 and Nextflow
gencorefacility/reform
Modify existing reference fasta and gff3/gtf files to include a new sequence
gencorefacility/r-notebooks
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
gencorefacility/variant-calling-pipeline
HPC based pipelines for variant calling using GATK
gencorefacility/covid19
Variant Analysis Pipeline for COVID19
gencorefacility/nf-workflows
Repository of NextFlow Workflows
gencorefacility/BADAS
Collection of BADAS related resources
gencorefacility/MAD
Minor Allele Detection Pipeline for SARS-CoV2
gencorefacility/MAD2
gencorefacility/mpileupplugin
A JBrowse plugin for plotting allele fraction data
gencorefacility/reformWeb
Flask WebUI for reform
gencorefacility/ReSeq
More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
gencorefacility/utils
gencorefacility/django-shibboleth-remoteuser
Middleware for using Shibboleth with Django
gencorefacility/GENEFLOW
Genomic Examination and Nucleotide Evaluation For Laboratory Operations Workflow
gencorefacility/hpc-gatk4