geneontology/minerva

Issues

• Generate blazegraph journal from input ontology for GPAD export

  #454 opened 3 years ago
  1

• Theiler stages ids not working when submitting to Minerva

  #449 opened 3 years ago
  10

• Update minerva to handle “maximal-causal-chain-length” and “display-as-pathway-override”

  #448 opened 3 years ago
  4

• Catch minerva version up to deal with security issues

  #442 opened 3 years ago
  9

• Incorrect evidence on inferred annotations based on ontology term logical definitions

  #437 opened 3 years ago
  1

• Individuals with type = complement does not bring root types

  #434 opened 3 years ago
  7

• parallel model importing may not be safe

  #432 opened 3 years ago
  4

• Model search should find UniProt IDs in REACTO classes

  #430 opened 3 years ago
  3

• Add Root Types for WBls:0000075 ZFS:0100000

  #428 opened 3 years ago
  7

• Should located_in be considered redundant with is_active_in?

  #426 opened 3 years ago
  14

• Remove the noctua GPAD file has_participant annotation extensions

  #425 opened 3 years ago
  5

• Filter the Noctua GPAD outputs for 'duplicate' annotations (new tool)

  #424 opened 3 years ago
  7

• Generate species GPADs using the GPI files

  #420 opened 3 years ago
  6

• Update minerva search api for handling date information

  #419 opened 3 years ago
  5

• Do not filter out GPAD annotations for 'do not annotate' violations

  #417 opened 3 years ago
  1

• Add 'existence starts and ends during' to allowed annotation extension relations

  #413 opened 3 years ago
  3

• Annotation missing from the MGI GPAD

  #412 opened 3 years ago
  12

• Creation dates are missing from GPAD outputs

  #411 opened 3 years ago
  3

• Some PRO annotations are missing from the GPAD

  #410 opened 3 years ago
  12

• Do PomBase identifiers have root type values in minerva?

  #408 opened 3 years ago
  9

• Add two new annotation extension relations to gpad-extensions.rq

  #406 opened 3 years ago
  18

• Tests take too long

  #403 opened 3 years ago
  0

• NullPointerException in ShexValidator when trying to report/handle ShEx non-conformant NOT individuals

  #399 opened 3 years ago
  1

• When multiple 'withs' are used in a single Function companion import, they get out put as separate annotations

  #398 opened 3 years ago
  3

• Export creation-date and modification-date annotation properties in GO-CAM GPAD

  #397 opened 4 years ago
  32

• Do not create root MF annotations based on root BP annotations

  #396 opened 3 years ago
  35

• Suppress UBERON annotation extensions when an EMAPA structure is present

  #395 opened 3 years ago
  6

• Do not generate additional annotations for regulated processes

  #394 opened 3 years ago
  22

• Update all 'directly' regulates relations to just 'regulates' relations

  #392 opened 2 years ago
  12

• Check existing GO-CAM models for MF 'occurs in' protein-containing complex (or children)

  #391 opened 4 years ago
  3

• We shouldn't output both part_of and is_active_in annotations in the GPAD from models

  #390 opened 3 years ago
  6

• QC checking for Noctua GPAD outputs for gene-centric models

  #389 opened 3 years ago
  4

• Taxon ID without label

  #388 opened 3 years ago
  4

• add is_active_in and located_in

  #385 opened 4 years ago
  1

• In some cases, minerva has trouble "saving" models (bad/malformed URI)

  #379 opened 3 years ago
  13

• Minerva seems to have trouble processing save requests when there are many files

  #378 opened 4 years ago
  5

• Search API query_match not giving matches if multiple matches in one model

  #375 opened 3 years ago
  1

• reset & undo not working from the graph

  #371 opened 4 years ago
  10

• Landing Page and ART search issue

  #370 opened 4 years ago
  2

• Model Title Search

  #368 opened 4 years ago
  5

• Model in store vs memory: inferred section and equals

  #366 opened 4 years ago
  4

• Get Model in store vs in memory

  #364 opened 4 years ago
  1

• fix owl explanation error

  #360 opened 4 years ago
  0

• check on cardinality for shex in noctua-dev

  #358 opened 4 years ago
  1

• Optimize minerva model diff

  #356 opened 4 years ago
  5

• Add "reset" "model" command to Minerva edit API

  #355 opened 4 years ago
  5

• Add "filter" to detect / remove import statements during journal creation

  #349 opened 4 years ago
  1

• Minerva Search API to provide modified-p tag

  #348 opened 4 years ago
  4

• remove imports from go-cams

  #345 opened 4 years ago
  17

• Model-level annotations missing in some cases (title)

  #344 opened 4 years ago
  10