geneontology/minerva

Issues

• Update input/output/transports relations to primary input/primary output in GO-CAMs

  #540 opened 9 months ago by vanaukenk
  1

• Subcommand --import-owl-models shows poor performance in CPU-rich environments

  #549 opened 4 months ago by kltm
  1

• Make all migrations / ontology maintenance run automatically

  #547 opened 5 months ago by kltm
  1

• add action to check conformance with "GPAD ShEx" on each change

  #544 opened 7 months ago by balhoff
  12

• Change how interacting taxon annotations in Noctua are exported to GPAD

  #545 opened 4 months ago by vanaukenk
  8

• causally_upstream_of _or _within -o- part _of -> causally_upstream_of _or _within

  #527 opened 4 months ago by ukemi
  12

• In some cases, minerva exits early exception when performing QC on graphstore

  #541 opened 7 months ago by kltm
  3

• Add feature or workflow to produce both inferred and non-inferred GPADs

  #539 opened a year ago by kltm
  1

• categorize obsolete terms into GO aspect

  #511 opened 2 years ago by balhoff
  10

• Annotation Preview lists additional "enabled by GENEPRODUCT" in extensions

  #534 opened a year ago by suzialeksander
  5

• Global date change when using the graph editor (x-hint-layout, etc.)

  #533 opened a year ago by ukemi
  9

• Question about how annotation date updates are assigned in Noctua

  #530 opened a year ago by vanaukenk
  3

• missing ISO annotatins in noctua annotation preview

  #532 opened a year ago by LiNiMGI
  12

• Don't follow causal property chains for regulation targets when outputting conventional annotations?

  #531 opened a year ago by ukemi
  0

• Annotation from a production model is missing on snapshot

  #524 opened a year ago by ukemi
  7

• Add the number of Molecular events to the report for Reactome loads

  #507 opened 2 years ago by ukemi
  2

• optionally preserve evidence in model copy

  #513 opened 2 years ago by balhoff
  5

• Write curator requirements doc for model copy with evidence

  #512 opened 2 years ago by vanaukenk
  1

• load provided triples file into triplestore before running update command, then unload

  #508 opened 2 years ago by balhoff
  0

• return any type mentioned in ShEx in root types

  #506 opened 2 years ago by balhoff
  2

• Explore adding auto-flush to disk to minerva

  #502 opened 2 years ago by kltm
  9

• remove old in_taxon triples when saving

  #503 opened 2 years ago by balhoff
  5

• add a CLI command to dump all models in JSON response format

  #500 opened 2 years ago by balhoff
  15

• Investigate Scov2 polyprotein listed as a species in Noctua

  #486 opened 3 years ago by vanaukenk
  13

• Model Copy: prior to implementing a model copy, allow curators to update the title and then save

  #490 opened 2 years ago by vanaukenk
  19

• Cannot Edit title when copying a copy

  #498 opened 2 years ago by tmushayahama
  11

• Model Copy: model is not saved on initial copy (modified-p is true). Not searchable on landing page

  #487 opened 2 years ago by tmushayahama
  5

• Model Copy: Group model metadata is not copied /added of the copied model

  #488 opened 2 years ago by tmushayahama
  4

• add model copy operation

  #464 opened 2 years ago by balhoff
  2

• Need correct root type on biological phase GO terms

  #496 opened 2 years ago by vanaukenk
  3

• Noctua model (correct in Annotation Preview) not making it to SGD GPAD

  #494 opened 2 years ago by suzialeksander
  6

• Decide on format for find and replace tsv

  #465 opened 2 years ago by vanaukenk
  10

• Mock run of new (proposed) SOP noctua-model replacement and updates

  #483 opened 3 years ago by kltm
  9

• Unique Model Title (random thought)

  #493 opened 3 years ago by tmushayahama
  0

• Copy contributor information in Model Copy operation

  #491 opened 3 years ago by ukemi
  1

• Model Copy: Display all models copied from a given source model in the model info box

  #489 opened 3 years ago by tmushayahama
  0

• Explore alternate methods of eliminating DELETEd models on restarts

  #484 opened 3 years ago by kltm
  0

• Test mock ontology term replacement for new SOP (II)

  #479 opened 3 years ago by kltm
  17

• Some Chebi Terms not in root types but in NEO

  #481 opened 3 years ago by tmushayahama
  1

• Placeholder: Make the Annotations Intuitive with Respect to Inputs of Receptors

  #480 opened 3 years ago by ukemi
  0

• Check root types on production minerva for all of the life stages (WBls, ZFS, XAO, Theiler)

  #466 opened 3 years ago by vanaukenk
  8

• Duplicate 'root' MF annotations in the GPAD should be filtered

  #474 opened 3 years ago by ukemi
  1

• Migrate obsolete term usages via replaced_by

  #456 opened 3 years ago by balhoff
  27

• Trace save/flush command and make sure equivalent to --dump-owl-models

  #475 opened 3 years ago by kltm
  6

• Test mock ontology term replacement for new SOP

  #476 opened 3 years ago by kltm
  6

• In some cases, large models significantly slow minerva

  #467 opened 3 years ago by kltm
  12

• include git revision and tbox ontology version in status service output

  #469 opened 3 years ago by balhoff
  6

• Create Annotations for nested processes

  #463 opened 3 years ago by ukemi
  0

• Migrate obsolete/invalid relations in GO-CAM models

  #460 opened 3 years ago by pgaudet
  2

• Root types on minerva-dev need to reflect latest neo build

  #457 opened 3 years ago by vanaukenk
  3