genetronhealth

example-data

gatk

Official code repository for GATK versions 4 and up

MNV-test-data

A BAM file containins five MNVs (Multiple Nucleotide Variants) for the purposes of testing bioinformatics pipelines.

safesim

SafeSeqS variant simulator

safesim-eval

Evaluation for SafeSim

uvc

UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)

uvc-delins

A tool for calling deletion-insertion variants (i.e., MNVs and complex InDels) released under the APACHE-2 license

uvc-delins-eval

Code used to evaluate UVC-delins with other variant callers on four datasets

uvc-eval

Code and scripts used to evaluate UVC

genetronhealth/uvc

UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)

genetronhealth/uvc-delins

A tool for calling deletion-insertion variants (i.e., MNVs and complex InDels) released under the APACHE-2 license

genetronhealth/safesim

SafeSeqS variant simulator

genetronhealth/uvc-delins-eval

Code used to evaluate UVC-delins with other variant callers on four datasets

genetronhealth/uvc-eval

Code and scripts used to evaluate UVC

genetronhealth/example-data

genetronhealth/gatk

Official code repository for GATK versions 4 and up

genetronhealth/MNV-test-data

A BAM file containins five MNVs (Multiple Nucleotide Variants) for the purposes of testing bioinformatics pipelines.

genetronhealth/safesim-eval

Evaluation for SafeSim