Pinned Repositories
AmBiVErT
AMplicon BInning Variant caller with ERror Truncation
BioNix-Training
Repo to host Oct 2022 BioNix Training material
cogent3
Comparative Genomics Toolkit 3
fqfa
A lightweight Python library for handling FASTQ and FASTA files.
nixpkgs
Nix Packages collection
pebbles
pylazybam
A pure python lazy BAM parser
survivalvolume
A set of tools for parsing measurement with threshold over time data (eg tyre wear, tumour treatment studies) and generating interactive and static plots.
xenomapper
A utility for splitting mixed origin NGS reads
xenomapper2
A utility for splitting mixed origin NGS reads with secondary or alt mappings
genomematt's Repositories
genomematt/xenomapper
A utility for splitting mixed origin NGS reads
genomematt/pylazybam
A pure python lazy BAM parser
genomematt/xenomapper2
A utility for splitting mixed origin NGS reads with secondary or alt mappings
genomematt/pebbles
genomematt/survivalvolume
A set of tools for parsing measurement with threshold over time data (eg tyre wear, tumour treatment studies) and generating interactive and static plots.
genomematt/fqfa
A lightweight Python library for handling FASTQ and FASTA files.
genomematt/nixpkgs
Nix Packages collection
genomematt/AmBiVErT
AMplicon BInning Variant caller with ERror Truncation
genomematt/BioNix-Training
Repo to host Oct 2022 BioNix Training material
genomematt/cogent3
Comparative Genomics Toolkit 3
genomematt/comp90014_workshops
Programming tutorials used in COMP90014 labs.
genomematt/CountESS
Python3 successor to Enrich2.
genomematt/CountESS-1
CountESS
genomematt/dgeclust
Hierarchical Non-Parametric Bayesian Clustering of Digital Expression Data
genomematt/dms-view.github.io
Interactive visualization of mutational antigenic profiling data
genomematt/lscc_docs
LSCC documentation in markdown format
genomematt/mpld3
D3 Renderings of Matplotlib Graphics
genomematt/mplexporter
A general scraper/exporter for matplotlib plots
genomematt/pipeline_base
Infrastructure for bioinformatics pipelines based on Ruffus
genomematt/pycogent
PyCogent: Official repository for software and unit tests
genomematt/rubra
Infrastructure code to support DNA pipeline
genomematt/scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
genomematt/shell-genomics
Lesson for the shell for genomics
genomematt/test_jupyter_live
genomematt/vcf-venn
A tool to compare variants contained within multiple vcf format files, to determine common and unique variants to each file. To write these variants to a new file also in vcf format.
genomematt/WFA2-lib
WFA2-lib: Wavefront alignment algorithm library v2
genomematt/whitewether
A collection of Nix expressions for creating Jupyter lab environments