Pinned Repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
ldsc
LD Score Regression (LDSC)
letsencrypt-mythic-dns01
Hook script for letsencrypt.sh to use Mythic Beasts DNS API
plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
rusqlite
Ergonomic bindings to SQLite for Rust
SEW
SEW
ukb-pret
variantkey
Numerical Encoding for Human Genetic Variants
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
wecall
Fast, accurate and simple to use command line tool for variant detection in NGS data.
Genomics's Repositories
genomics-dev/variantkey
Numerical Encoding for Human Genetic Variants
genomics-dev/ukb-pret
genomics-dev/SEW
SEW
genomics-dev/rusqlite
Ergonomic bindings to SQLite for Rust
genomics-dev/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
genomics-dev/sbpack
Command line utility to pack and upload/download CWL to/from SB powered platform
genomics-dev/ansible-style-guide
Style guide for writing Ansible
genomics-dev/arvados
An open source platform for managing and analyzing biomedical big data
genomics-dev/bioconda-recipes
Conda recipes for the bioconda channel.
genomics-dev/cgat-core
Core functionality of the CGAT code
genomics-dev/clinical_benefits
genomics-dev/cromwell-tools
A collection of Python clients and accessory scripts for interacting with the Cromwell
genomics-dev/dehydrated
letsencrypt/acme client implemented as a shell-script – just add water
genomics-dev/flare
The flare program performs local ancestry inference
genomics-dev/instant
A std::time::Instant replacement that works on WASM too.
genomics-dev/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
genomics-dev/poetry
Python dependency management and packaging made easy.
genomics-dev/poetry-core
Poetry PEP 517 Build Backend & Core Utilities
genomics-dev/python-profiling-tutorial
Profiling Tutorial
genomics-dev/RClickhouse
A 'DBI' Interface to the Clickhouse Database Providing Basic 'dplyr' Support
genomics-dev/rust-bindgen
Automatically generates Rust FFI bindings to C (and some C++) libraries.
genomics-dev/serde_rusqlite
Serialize/deserialize rusqlite rows
genomics-dev/singularity
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.
genomics-dev/SoftEtherVPN_Stable
Cross-platform multi-protocol VPN software. This repository is officially managed by Daiyuu Nobori, the founder of the project. Pull requests should be sent to the master repository at https://github.com/SoftEtherVPN/SoftEtherVPN.
genomics-dev/terraform-provider-dns
Terraform DNS provider
genomics-dev/testcafe-reporter-xunit
This is the xUnit reporter plugin for TestCafe.
genomics-dev/ultrajson
Ultra fast JSON decoder and encoder written in C with Python bindings
genomics-dev/wasm-bindgen
Facilitating high-level interactions between Wasm modules and JavaScript
genomics-dev/wasmer-js
Monorepo for Javascript WebAssembly packages by Wasmer
genomics-dev/yaml-rust
A pure rust YAML implementation.