genomicsITER/NanoCLUST

Error: Infinite execution of the docker analysis of the nanoclust profile, execution in conda environment.

HealthyMadness opened this issue · 0 comments

Hi, I am trying to automate the use of nanoclust. I program in Spyder, inside the conda environment. On the contrary, I use the docker profile to run nanoclust. The problem arises when testing the script in spyder inside conda I call nanoclust, thanks to the os module. In that circumstance the program runs constantly without stopping, constantly bringing many tables with the progress of the analysis. I checked if it was due to some loop, but it seems that this is not the reason. It has more to do with the docker profile and the use of spyder in a conda environment? Thanks