genomicsITER/NanoCLUST

Issues

• amplicons of whole operon (16S-ITS-23S, ~4.1k mean read length) failed at read_clustering step

  #93 opened 5 months ago by chris-krohn
  4

• some samples terminate at read_correction due to gzip: corrected_reads.correctedReads.fasta.gz: No such file or directory

  #78 opened 2 years ago by MichelMoser
  2

• Potential bug with `cluster_sel_epsilon` option. Rounded to 0

  #95 opened 5 months ago by aringeri
  0

• Change database

  #94 opened 5 months ago by ccuriqueo
  0

• swap memory issues

  #51 opened 3 years ago by mawa86
  2

• Error running test

  #70 opened 2 years ago by claudiodonati
  3

• Error when using Nextflow 22.10.7: Unable to parse config file...compile failed for sources FixedSetSources...

  #92 opened 7 months ago by imanamoeba
  0

• NanoCLUST script not supported by latest Nextflow

  #91 opened 7 months ago by lucas-g-huggins
  1

• Unable to attach MultiQC report to summary email

  #90 opened 8 months ago by ealderli
  0

• Remote resource not found when running via Nextflow with nf-core/nanoclust

  #86 opened a year ago by alanorth
  2

• No such variable: barcode

  #48 opened 3 years ago by Socotr
  1

• Missing output file(s) `consensus_medaka.fasta/consensus.fasta` expected by process `medaka_pass (3)`

  #44 opened 3 years ago by Syutenjyo
  4

• Create a database (DB) from a custom database.

  #88 opened a year ago by miangher
  0

• No taxonomy in the summary file

  #87 opened a year ago by camillaln
  0

• consensus_classification error ?

  #66 opened 2 years ago by ap1438
  5

• Error executing process > 'get_abundances (1)'

  #80 opened a year ago by BirgitRijvers
  4

• touch Permission denied with test

  #85 opened a year ago by brbergamo
  0

• medaka consensus error

  #83 opened 2 years ago by tarah28
  1

• Error read_clustering (ValueError: could not convert string to float: 'TTTTG')

  #84 opened a year ago by SieglindeCoppens
  0

• ERROR: Nextflow DSL1 is no longer supported

  #81 opened 2 years ago by iaposto
  1

• read clustering issue

  #54 opened 3 years ago by mfranchett
  1

• Error executing process > 'get_abundances (1)'

  #71 opened 2 years ago by claudiodonati
  2

• How we get reads for each consensus fasta file in each cluster, and coverage of our data

  #79 opened 2 years ago by simaafshar
  0

• Error executing process > 'consensus_classification (1)'

  #75 opened 2 years ago by liliay
  4

• Process `consensus_classification (5)` terminated with an error exit status (255)

  #77 opened 2 years ago by ysuzuki1978
  1

• Error in: NCBI C++ Exception > consensus_classification

  #60 opened 3 years ago by simaafshar
  3

• Merge fastq files prior to Nanoclust

  #76 opened 2 years ago by liliay
  0

• Error executing process > read_correction

  #42 opened 4 years ago by adhamzul
  1

• Blast DB error during consensus_classification

  #74 opened 2 years ago by Nobelex
  0

• Process read_correction is applied to a subset of reads from the fasta file

  #73 opened 2 years ago by mszimmermann
  0

• Can you do OTU clustering with ASVs that are different lengths?

  #72 opened 2 years ago by jolespin
  0

• Error executing process > consensus_classification

  #43 opened 3 years ago by fritzthm
  18

• `get_abundances (1)` terminated with an error exit status (1)

  #57 opened 3 years ago by gghyl
  5

• Process consensus_classification terminated with an error exit status (255)

  #62 opened 3 years ago by fairquestion
  4

• Error_executing_process > 'join_results(1)'

  #69 opened 3 years ago by HealthyMadness
  0

• Error: Infinite execution of the docker analysis of the nanoclust profile, execution in conda environment.

  #68 opened 3 years ago by HealthyMadness
  0

• read_clustering error with own data, test data works

  #67 opened 3 years ago by thierryjanssens
  0

• I Got this error while running Nanoclust?

  #65 opened 3 years ago by ap1438
  0

• How to avoid create config env in different data (when -profile conda)

  #64 opened 3 years ago by cam315
  0

• Missing workflow definition - DSL2 requires at least a workflow block in the main script

  #63 opened 3 years ago by timyaro
  2

• medaka fails

  #61 opened 3 years ago by vdejager
  0

• sample.fastq format issue

  #59 opened 3 years ago by ctmlab4
  0

• Is it possible to set merylMemory within the NanoClust workflow?

  #58 opened 3 years ago by DanBeaton
  1

• Noting toxonomy information for taxid from api.unipet using get_abundance.py

  #56 opened 3 years ago by simaafshar
  0

• Taxon_id output from http://api.unipept.ugent.be/api/v1/taxonomy.json?input have no output ,even for mock4_run3bc08_5000.fastq !, t

  #55 opened 3 years ago by simaafshar
  0

• [test,conda]: read_clustering error

  #49 opened 3 years ago by RemiMaglione
  4

• Not a valid project name: main.nf

  #50 opened 3 years ago by mawa86
  0

• nanoclust running problem read_clustering

  #46 opened 3 years ago by Aspergillo
  1

• Docker profiles

  #47 opened 3 years ago by msierk
  0

• Launching 'main.nf' [nauseous_albattani] - revision: 4b892cc54e

  #45 opened 3 years ago by Aspergillo
  0