BirgitRijvers
Bioinformatician at Erasmus MC, BSc Biology & Medical Laboratory Science
Erasmus MCBreda
Pinned Repositories
16S_NBK
A Nextflow pipeline to classify bacteria based on 16S genes sequenced with ONTs native barcoding kit
Cancer_Microbiome_Scripts
This repository contains a collection of scripts used during researching the microbiome in tumours.
COPD-Microbiome-Shift-Analysis
This is the repository for a bioinformatics project about identifying the optimal pipeline for identifying a potential microbiome shift in COPD patients after ceasing azithromycin treatment.
EMC-MetaMicrobes
Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
MetONTIIME_extra_diversity
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework, with extra diversity analysis included
NanoCLUST-tutorial
This is a tutorial that helps people without command-line experience install and run NanoCLUST.
NanoCLUST_runner
Python script that runs NanoCLUST on files in a directory with only 1 command.
NanoCLUST_toolkit
Small programs that enhance NanoCLUST usage and output
NGS-assignment-workflow
Repository of the NGS workflow building assignment of Yke Stockman, Isabelle Sewsahai, Mathijs Schouten en Birgit Rijvers
MetONTIIME
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
BirgitRijvers's Repositories
BirgitRijvers/EMC-MetaMicrobes
Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.
BirgitRijvers/COPD-Microbiome-Shift-Analysis
This is the repository for a bioinformatics project about identifying the optimal pipeline for identifying a potential microbiome shift in COPD patients after ceasing azithromycin treatment.
BirgitRijvers/NanoCLUST-tutorial
This is a tutorial that helps people without command-line experience install and run NanoCLUST.
BirgitRijvers/16S_NBK
A Nextflow pipeline to classify bacteria based on 16S genes sequenced with ONTs native barcoding kit
BirgitRijvers/Cancer_Microbiome_Scripts
This repository contains a collection of scripts used during researching the microbiome in tumours.
BirgitRijvers/MetONTIIME_extra_diversity
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework, with extra diversity analysis included
BirgitRijvers/NanoCLUST_runner
Python script that runs NanoCLUST on files in a directory with only 1 command.
BirgitRijvers/NanoCLUST_toolkit
Small programs that enhance NanoCLUST usage and output
BirgitRijvers/NGS-assignment-workflow
Repository of the NGS workflow building assignment of Yke Stockman, Isabelle Sewsahai, Mathijs Schouten en Birgit Rijvers