MaestSi/MetONTIIME

Issues

• Looking for a pre-taxonomic assignment OTU table

  #108 opened 3 months ago by irc47
  4

• metONTIIME Running Slow - Cannot Increase RAM

  #109 opened 2 months ago by danuccio
  9

• Problem with finding the path 'workDir'

  #110 opened 3 months ago by sebastianavalon
  7

• AssignTaxonomy error exit status 137

  #83 opened a year ago by tjlim10
  10

• Assign Taxonomy Error Unclear

  #107 opened 5 months ago by irc47
  2

• Does MetONTIIME perform demultiplex?

  #106 opened 5 months ago by tjlim10
  1

• Error executing process > 'concatenateFastq'

  #104 opened 6 months ago by isa-wilson
  7

• CollapseTables only makes level 1 with greengenes DB

  #105 opened 6 months ago by irc47
  2

• The following IDs are not present in the metadata

  #103 opened 6 months ago by ShareiFae
  33

• Missing `fromPath` parameter -- Check script 'metontiime2.nf'

  #99 opened 7 months ago by stephaniekoo
  12

• Error executing derepSeq involving Vsearch

  #100 opened 7 months ago by danuccio
  6

• Error executing process > 'assignTaxonomy

  #102 opened 7 months ago by anilchauhanhp9
  3

• missing fromPath parameter error when trying test data set

  #101 opened 8 months ago by irc47
  5

• import fasta files

  #98 opened 8 months ago by anilchauhanhp9
  4

• --maxNumReads set to more than 50000

  #97 opened 9 months ago by leakrema
  2

• Error executing 'derepSeq' process during analysis with provided example data

  #96 opened 10 months ago by linxavier1
  6

• Suggest: either gzip, or use .fastq extension

  #94 opened 10 months ago by richelbilderbeek
  1

• Cannot re-open Issue at https://github.com/MaestSi/MetONTIIME/issues/93#issuecomment-1985402041

  #95 opened 10 months ago by richelbilderbeek
  2

• Minimal-but-complete set of example files, say, below 1 MB, to work with the supplied config file?

  #93 opened 10 months ago by richelbilderbeek
  10

• Run MetONTIIME on GitHub Actions with Singularity: qsub not found

  #90 opened 10 months ago by richelbilderbeek
  2

• Run MetONTIIME on GitHub Actions with Docker: Process requirement exceeds available CPUs -- req: 6; avail: 4

  #91 opened 10 months ago by richelbilderbeek
  1

• How to lower process requirement for memory?

  #92 opened 10 months ago by richelbilderbeek
  1

• Can run MetONTIIME on a local computer? If yes: call sbatch on non-HPC hardware?

  #89 opened 10 months ago by richelbilderbeek
  1

• Question: filtering features for nanopore sequencing data

  #88 opened a year ago by tjlim10
  2

• Error executing process > 'concatenateFastq'

  #87 opened a year ago by ianm0001
  13

• Combining output files

  #85 opened a year ago by annegilewski
  2

• deprepSeq not created

  #86 opened a year ago by ObRICa
  1

• Error executing process > 'downsampleFastq'

  #84 opened a year ago by erazzolini
  16

• Error 137 on Docker

  #82 opened a year ago by annegilewski
  3

• Switching to GreenGenes db

  #81 opened a year ago by annegilewski
  6

• Failure to Launch...

  #80 opened a year ago by annegilewski
  24

• Large amount unclassified with Blast

  #79 opened a year ago by BirgitRijvers
  4

• Taxonomy_tsv file

  #78 opened a year ago by leakrema
  3

• Large dataset advice

  #77 opened a year ago by BirgitRijvers
  13

• Process error

  #76 opened a year ago by ObRICa
  11

• Taxonomic assignment - 50%+ unassigned reads

  #75 opened a year ago by mzakram219
  3

• Assistance with MetONTIIME

  #74 opened a year ago by annegilewski
  15

• COLLAPSE_TABLE PROCESS CREATES ONLY RESULTS FOR TAXONOMIC LEVEL1

  #72 opened a year ago by dloukovi
  5

• process killed in 'assign taxonomy'

  #71 opened a year ago by dloukovi
  4

• Adjust CPU and RAM

  #73 opened a year ago by timyerg
  2

• Problem while pulling the singularity image on a cluster

  #70 opened a year ago by Enorya
  5

• Question for running a large dataset

  #68 opened a year ago by ShaelynXU
  5

• Invalid value for '--o-bray-curtis-distance-matrix':

  #69 opened a year ago by baotg080599
  2

• ERROR ~ Error executing process > 'importDb (1)'

  #67 opened a year ago by ShaelynXU
  12

• folder 4e does not exist

  #66 opened a year ago by joyleng
  3

• ERROR ~ Error executing process > 'concatenateFastq'

  #62 opened a year ago by hvanderheyden
  9

• No such variable: sequences_db

  #65 opened a year ago by joyleng
  18

• ERROR: process > diversityAnalyses

  #64 opened 2 years ago by nbel15
  15

• ERROR ~ Error executing process > 'concatenateFastq'

  #63 opened 2 years ago by baotg080599
  11

• Analysis Keep on Crashing. Metadata file path not found.

  #61 opened 2 years ago by Jawen-D
  12