MaestSi
I'm a Biomedical Engineer and Ph. D. in Biotechnology now working as a postdoc at University of Milan
UniversitĂ degli Studi di MilanoMilano, Italy
Pinned Repositories
CharONT
An ONT-based pipeline for characterizing long genomic regions
CharONT2
A NextFlow ONT-based pipeline for characterizing long genomic regions
Illumina_variant_calling
A quality check, alignment and small variant calling pipeline for Illumina paired-end reads
MetaBlast
A Metagenomic pipeline for parallel Blast analysis and report generation.
MetaKraken2
A Metagenomic pipeline for Kraken2 analysis and Krona report generation.
MetONTIIME
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
nf-m6anet
A NextFlow pipeline for m6A detection from Nanopore direct RNA-seq data
ONTrack
A MinION-based pipeline for tracking species biodiversity
ONTrack2
A Nextflow MinION-based pipeline for tracking species biodiversity
UMInator
A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIs
MaestSi's Repositories
MaestSi/MetONTIIME
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
MaestSi/ONTrack
A MinION-based pipeline for tracking species biodiversity
MaestSi/MetaBlast
A Metagenomic pipeline for parallel Blast analysis and report generation.
MaestSi/CharONT2
A NextFlow ONT-based pipeline for characterizing long genomic regions
MaestSi/nf-m6anet
A NextFlow pipeline for m6A detection from Nanopore direct RNA-seq data
MaestSi/ONTrack2
A Nextflow MinION-based pipeline for tracking species biodiversity
MaestSi/CharONT
An ONT-based pipeline for characterizing long genomic regions
MaestSi/MetaKraken2
A Metagenomic pipeline for Kraken2 analysis and Krona report generation.
MaestSi/UMInator
A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIs
MaestSi/Illumina_variant_calling
A quality check, alignment and small variant calling pipeline for Illumina paired-end reads
MaestSi/ONT_preprocessing
A preprocessing pipeline for ONT data
MaestSi/Bionano_fixdups
A script for removing artificial duplications introduced by Bionano solve scaffolding pipeline
MaestSi/Covid19_ONT_Artic
A set of scripts for running the ARTIC pipeline from fast5 ONT data to filtered SARS-CoV-2 variants and coverage plots
MaestSi/pycoMethFlow
A nextflow pipeline for running pycoMeth
MaestSi/QIIME2_Illumina
A Meta-barcoding pipeline for analysing Illumina data in QIIME2 framework
MaestSi/nf-msspe
A NextFlow pipeline for Metagenomic Sequencing with Spiked Primer Enrichment
MaestSi/ONToHap
An ONT-based pipeline for haplotype phasing
MaestSi/MosaicViewer_CNBP
A pipeline for schematic IGV visualization of expanded CNBP alleles with somatic mosaicism
MaestSi/MosaicViewer_FMR1
A pipeline for schematic IGV visualization of FMR1 alleles with somatic mosaicism
MaestSi/MosaicViewer_HTT
A pipeline for schematic IGV visualization of HTT alleles with somatic mosaicism
MaestSi/nf-eligos
A NextFlow pipeline for modifications detection from Nanopore direct RNA-seq data
MaestSi/entrez_qiime
A utility to generate input files for taxonomy assignment in QIIME from the NCBI database
MaestSi/MaestSi
My personal repository