Pinned Repositories
aptaflow
assocplots
barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
bedtools2
bedtools - the swiss army knife for genome arithmetic
BioMarkovChains.jl
Representing biological sequences as Markov chains
CopyNumberPlots
R package to create plots representing copy number data using karyoploteR
django-rest-framework
Web APIs for Django.
django_mixs
epacts-data
vdejager's Repositories
vdejager/aptaflow
vdejager/assocplots
vdejager/barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
vdejager/bedtools2
bedtools - the swiss army knife for genome arithmetic
vdejager/BioMarkovChains.jl
Representing biological sequences as Markov chains
vdejager/CopyNumberPlots
R package to create plots representing copy number data using karyoploteR
vdejager/django-rest-framework
Web APIs for Django.
vdejager/django_mixs
vdejager/epacts-data
vdejager/ESPAltherma
Monitor your Daikin Altherma / ROTEX heat pump with ESP32
vdejager/Exomiser
A Tool to Annotate and Prioritize Exome Variants
vdejager/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
vdejager/funannotate
Eukaryotic Genome Annotation Pipeline
vdejager/GeneFinder.jl
A Gene Finder framework for Julia.
vdejager/GenomicMaps.jl
Julia package for visualising genomic data
vdejager/hikvision-client
Client for Hikvision devices
vdejager/jbrowse-jupyter
Jupyter Notebooks extension for showing JBrowse views
vdejager/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
vdejager/mip-RsCh-pipe
vdejager/orfipy
Fast and flexible ORF finder
vdejager/pipetaxon
PipeTaxon exposes the ncbi taxonomy database as a REST API.
vdejager/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
vdejager/python-client
Python client library for Core API.
vdejager/qiime2
Official repository for the QIIME 2 framework.
vdejager/seqtk
Toolkit for processing sequences in FASTA/Q formats
vdejager/SpliceV
Visualize coverage, canonical, and backsplice junctions.
vdejager/stringdb-beacon
Knowledge Beacon Wrapper for the StringDb resource (https://string-db.org/)
vdejager/tagseq-qiime2-snakemake
Pipeline to run qiime2 with snakemake
vdejager/templated-docs
Generate PDF, MS Word and Excel documents from templates in Django
vdejager/viroverse
a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows