Pinned Repositories
100_Days_OF_Python
This repository chronicles my 100-day Python learning journey, where I'll start from the very basics and work my way up to more advanced concepts. Each day, I'll upload my progress, including Jupyter Notebook files (.ipynb) that contain code, explanations, and exercises.
1brc
1️⃣🐝🏎️ The One Billion Row Challenge -- A fun exploration of how quickly 1B rows from a text file can be aggregated with Java
2023-manuscript-materials
Example script and input for positioning of helices to make protein bricks, as described in manuscript
3d-Cell-Model
3d project that allows users to learn the anatomy of an animal cell.
Daft
The Python DataFrame for Complex Data
dandelion
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
exon-duckdb
DuckDB Extension for working with bioinformatic data.
genedb
一个中文基因数据库 面向专业人员也面向普通大众
iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
nvidia-container-toolkit
Build and run containers leveraging NVIDIA GPUs
genostack's Repositories
genostack/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
genostack/biopipen
A set of processes/pipelines for bioinformatics
genostack/ChimeraX
Source code for molecular graphics program UCSF ChimeraX
genostack/CUDASW4
CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search
genostack/DeepSeek-Coder
DeepSeek Coder: Let the Code Write Itself
genostack/Deneb-Showcase
A collection of advanced dataviz examples using Vega, Vega-Lite, Deneb and Power BI.
genostack/fastRAG
Efficient Retrieval Augmentation and Generation Framework
genostack/GeoAB
This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
genostack/harlequin
The SQL IDE for Your Terminal.
genostack/hibou
Hibou: Foundational Models for Pathology
genostack/iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
genostack/katib
Automated Machine Learning on Kubernetes
genostack/lida
Automatic Generation of Visualizations and Infographics using Large Language Models
genostack/luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
genostack/martian
Language and framework for high performance computational pipelines.
genostack/MaxKB
💬 基于 LLM 大语言模型的知识库问答系统。开箱即用，支持快速嵌入到第三方业务系统，1Panel 官方出品。
genostack/mercury
Convert Jupyter Notebooks to Web Apps
genostack/Method-Draw
Method Draw, the SVG Editor for Method of Action
genostack/nifi
Apache NiFi
genostack/openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
genostack/panelize
A Quarto Extension that formats code cells into a tabset panel, displaying static and interactive code cells side-by-side with code cell options.
genostack/presto
Fast Wilcoxon and auROC
genostack/pypalettes
A large collection of matplotlib color maps
genostack/quarto-webr-pyodide-demo
Demo repository for creating a Quarto workflow with {quarto-webr} and {quarto-pyodide}
genostack/querybook
Querybook is a Big Data Querying UI, combining collocated table metadata and a simple notebook interface.
genostack/redpanda
Redpanda is a streaming data platform for developers. Kafka API compatible. 10x faster. No ZooKeeper. No JVM!
genostack/thread
AI-Powered Jupyter Notebook built using React
genostack/tigervnc
High performance, multi-platform VNC client and server
genostack/unitycatalog
Open, Multi-modal Catalog for Data & AI
genostack/VinaDock-Notebooks
Cloud-based molecular docking for everyone