Error running example of Phylomorphospace

[aConar]

Dear Dean,

Running the phylomorphospace example found in ?gm.prcomp throws an error:

data(plethspecies) 
Y.gpa <- gpagen(plethspecies$land)
PCA.w.phylo <- gm.prcomp(Y.gpa$coords, phy = plethspecies$phy)
summary(PCA.w.phylo)
plot(PCA.w.phylo, phylo = TRUE, main = "PCA.w.phylo")

Error: Some of the arguments in phylo.pars are different than those that are possible (see Arguments).

A new plot is showed but no tree nor nodes are shown, only the tip species.
Im running R version 4.3.3 (2024-02-29), with geomorph v4.0.7 and RRPP v2.0.0 in Debian 12.
Kind regards,

Ale

[deanadams]

This has been addressed. It is in the plot parameters. Try reinstalling from github and running again. D Dr. Dean C. Adams Distinguished Professor of Evolutionary Biology Department of Ecology, Evolution, and Organismal Biology Iowa State University https://faculty.sites.iastate.edu/dcadams/ phone: 515-294-3834 From: aConar ***@***.***> Sent: Wednesday, March 27, 2024 12:48 PM To: geomorphR/geomorph ***@***.***> Cc: Subscribed ***@***.***> Subject: [geomorphR/geomorph] Error running example of Phylomorphospace (Issue #46) Dear Dean, Running the phylomorphospace example found in ?gm.prcomp throws an error: data(plethspecies) Y.gpa <- gpagen(plethspecies$land) PCA.w.phylo <- gm.prcomp(Y.gpa$coords, phy = plethspecies$phy) summary(PCA.w.phylo) plot(PCA.w.phylo, phylo = TRUE, main = "PCA.w.phylo") Error: Some of the arguments in phylo.pars are different than those that are possible (see Arguments). A new plot is showed but no tree nor nodes are shown, only the tip species. Im running R version 4.3.3 (2024-02-29), with geomorph v4.0.7 and RRPP v2.0.0 in Debian 12. Kind regards, Ale — Reply to this email directly, view it on GitHub<#46>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABSK7KKH6WP7TXSFBP3WTTTY2MA6RAVCNFSM6AAAAABFLLBZNCVHI2DSMVQWIX3LMV43ASLTON2WKOZSGIYTCNBRHEYTINQ>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.******@***.***>>

[aConar]

Thanks, it worked.
Ale