Pinned Repositories
16S_aligner
Attempts to bunch and assemble 16S reads using pplacer phylogenetic placements. Intended for use with graftM.
bbbin
A collection of working and non-working bioinformatics scripts
concatenate_alignment
Concatenate alignments
detectM
enrichM
Toolbox for comparative genomics of MAGs
fundec
Getaxnseq
Create Taxonomy and Sequence from GreenGenes taxonomy
graftM
GraftM - Rapid community profiles from metagenomes
graftM-docker
docker images for GraftM
graftm_gpkgs
geronimp's Repositories
geronimp/enrichM
Toolbox for comparative genomics of MAGs
geronimp/graftM
GraftM - Rapid community profiles from metagenomes
geronimp/graftm_gpkgs
geronimp/16S_aligner
Attempts to bunch and assemble 16S reads using pplacer phylogenetic placements. Intended for use with graftM.
geronimp/detectM
geronimp/bbbin
A collection of working and non-working bioinformatics scripts
geronimp/concatenate_alignment
Concatenate alignments
geronimp/fundec
geronimp/Getaxnseq
Create Taxonomy and Sequence from GreenGenes taxonomy
geronimp/graftM-docker
docker images for GraftM
geronimp/HandyScripts
Handy scripts I've set aside in case people find them handy
geronimp/HMM_trainer
train HMMs
geronimp/interest_filter
geronimp/iterassem
geronimp/JBContigFilter
asdf
geronimp/make_clade_specific_hmm
geronimp/MetaRawPh
geronimp/mingle
Australian Centre for Ecogenomics' genome tree database: Taxonomically annotated trees from HMMs
geronimp/pip
The PyPA recommended tool for installing Python packages
geronimp/refineomatic
geronimp/startbootstrap-simple-sidebar
An off canvas sidebar navigation Bootstrap HTML template created by Start Bootstrap
geronimp/window_sequence