gertzem

Pinned Repositories

• SCS_deconvolution

  code implementing methods for pooling bulk and single cell data for copy number deconvolution

  Language:Python4404

• MORSE

  Language:Jupyter Notebook01

• ProcessTrialtrove

  Software for analyzing the data in the trialtrove database

  Language:Python0301

• tcga-microbiome-prediction

  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2020), including equivalent models using TCGA RNA-seq gene expression and combined microbial abundance and gene expression for comparison.

  Language:Python14109

gertzem's Repositories