gerverska
Postdoc studying the foliar endophytic mycobiome of coastal Douglas-fir at Oregon State University
Oregon State UniversityCorvallis, Oregon
Pinned Repositories
amplicon_seq
conda + renv = easily deployed microbiome analysis environments
amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
canopy
Douglas-fir needles + fungi + metabarcoding + LiDAR = insights into canopy community dynamics
ClimateNAr
My fork of the ClimateNAr R package by author and maintainer Tongli Wang
DMM
Code for simulation experiment testing the performance of Dirichlet-multinomial modelling for data of varying attributes.
fun-gi
hamPCR + Douglas-fir + needle fungi
git-gh-demo
Learning git + gh
guillotine
Foliar pillory for standardizing needle length; razor and revolution not included
if-unite-insdc
Index Fungorum + UNITE + INSDC = better taxonomic reference sequences
oligotcha
Designing and testing blocking oligos
gerverska's Repositories
gerverska/amplicon_seq
conda + renv = easily deployed microbiome analysis environments
gerverska/amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
gerverska/canopy
Douglas-fir needles + fungi + metabarcoding + LiDAR = insights into canopy community dynamics
gerverska/ClimateNAr
My fork of the ClimateNAr R package by author and maintainer Tongli Wang
gerverska/DMM
Code for simulation experiment testing the performance of Dirichlet-multinomial modelling for data of varying attributes.
gerverska/dwca_hunter
Downloads biodiversity resources from internet and converts them to DarwinCore Archive files
gerverska/ecoCopula
R package to find species interactions from co-occurrence data
gerverska/fun-gi
hamPCR + Douglas-fir + needle fungi
gerverska/ggtreeDendro
Drawing 'dendrogram' using 'ggtree'
gerverska/git-gh-demo
Learning git + gh
gerverska/gllvm
Generalized Linear Latent Variable Models
gerverska/guillotine
Foliar pillory for standardizing needle length; razor and revolution not included
gerverska/if-unite-insdc
Index Fungorum + UNITE + INSDC = better taxonomic reference sequences
gerverska/iNEXT
R package for interpolation and extrapolation
gerverska/lulu
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
gerverska/oligotcha
Designing and testing blocking oligos
gerverska/mvabund
mvabund updates
gerverska/openair
Tools for air quality data analysis
gerverska/plantecophys
Analysing and Modelling Leaf Gas Exchange Data in R
gerverska/rarefy-demo
How to use and misuse rarefaction for estimation of alpha-diversity
gerverska/Spreading-Correction
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
gerverska/topoDistance
topoDistance: an R package for calculating topographic paths and distances
gerverska/worldmet
Easy access to NOAA Integrated Surface Database (ISD) surface meteorological observations