- Docker used: broadinstitute/gatk:4.1.4.1
- Reference files - including PON, come from GATK-best-practice bundle
- Original WDL for GATK 4.1.4.1 Best Practice
- Genome build: hg19
- Disk image:
- NAME: mutect2-wolf
- PROJECT: broad-cga-qing-gdac
A minimal implementation tested work, will add
- Build a disk image for all reference files,
potentially as another task - Cross-validate on Terra with same input
- Cost estimate
- Incorporates more optional arguments (bells and whistles)
Thanks to Aaron for building robust canine backend, to Julian for creating wolF and quick & responsive support.