Pinned Repositories
easy-webmention-js
A simple JavaScript library to serve Webmentions via Webmention.io
fastx-barber
Python package to trim and extract flags from FASTA and FASTQ files.
GitHub-Actions-Planet-GitHubUniverse2021-NA
Welcome to GitHub Actions planet, which lives among the GitHub Universe and is a place with full of joys, knowledges, and activities
GPSeq-RadiCal
R script for fast and streamlined Radiality Calculation from GPSeq data.
gpseqc
Nuclear centrality estimation from GPSeq experiment.
iFISH-probe-design
iFISH Probe Design: a Python3 package to build iFISH probes.
oligo-melting
Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.
ood-fish
Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)
python-click-autocomplete-example
Example on how to set up shell autocomplete for Python scripts.
radiantkit
A Python3 Radial Image Analysis Toolkit
ggirelli's Repositories
ggirelli/oligo-melting
Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.
ggirelli/GitHub-Actions-Planet-GitHubUniverse2021-NA
Welcome to GitHub Actions planet, which lives among the GitHub Universe and is a place with full of joys, knowledges, and activities
ggirelli/iFISH-probe-design
iFISH Probe Design: a Python3 package to build iFISH probes.
ggirelli/python-click-autocomplete-example
Example on how to set up shell autocomplete for Python scripts.
ggirelli/easy-webmention-js
A simple JavaScript library to serve Webmentions via Webmention.io
ggirelli/fastx-barber
Python package to trim and extract flags from FASTA and FASTQ files.
ggirelli/radiantkit
A Python3 Radial Image Analysis Toolkit
ggirelli/ifpd2
ifpd2: a Python3.7+ package to build iFISH probes
ggirelli/pygpseq
Python3 package to analyse GPSeq images and manage TIFF files.
ggirelli/python-package-template
A Python3.8+ package template with workflows (linting and packaging), pre-commits, and issue templates.
ggirelli/bioTrackBinner
Binning biological data tracks and producing RDS containing data.tables
ggirelli/GPSeq-RadiCal
R script for fast and streamlined Radiality Calculation from GPSeq data.
ggirelli/advent-of-code-2021
ggirelli/advent-of-code-2022
My Advent of Code 2022 adventure
ggirelli/cocogitto
The Conventional Commits toolbox
ggirelli/configs
Config files and configuration procedures.
ggirelli/deconwolf-in-situ-transcriptomics
Analysis of deconwolfed ISST data generated by Nilsson lab.
ggirelli/deconwolf-oligofisseq
ggirelli/deconwolf-tissue-smFISH
ggirelli/docs-template
This is a clone of docs.opensauced.pizza
ggirelli/fqdedup
Single-ended FASTQ file deduplication
ggirelli/ggirelli
ggirelli/ggirelli.info-discussions
ggirelli/gpseq-preproc
Pre-process GPSeq sequencing data
ggirelli/iFISH4U
Custom routes, pages and files for iFISH4U website.
ggirelli/kmermaid
K-Mer management tools
ggirelli/mud-fish
Melting, Unfolding and Denaturants in Fluorescence In Situ Hybridization (a.k.a. MUD-FISH) allows to identify optimal FISH conditions.
ggirelli/protoc-gen-validate
Protocol Buffer Validation - Checkout the new `protovalidate` project
ggirelli/protovalidate
Protocol Buffer Validation - New Go Beta Release!
ggirelli/start-here
You should open this repo first