Pinned Repositories
AECT
A deep learning based pipeline for TSS coverage denoising and feature extraction from shallow cell free DNA sequencing
autoconf-archive
A mirror of the GNU Autoconf Archive, a collection of more than 500 macros for GNU Autoconf that have been contributed as free software by friendly supporters of the cause from all over the Internet.
bax2bam
Convert legacy PacBio Bax.H5, Bas.H5, and Ccs.H5 files to the new PacBio BAM format
bax2bam2
ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
ili9341-spi
ILI9341 TFT Driver for Mongoose OS
MACS
MACS -- Model-based Analysis of ChIP-Seq
PB_R_ML
pbbam
PacBio BAM C++ library
R
R helper functions
ggraham's Repositories
ggraham/AECT
A deep learning based pipeline for TSS coverage denoising and feature extraction from shallow cell free DNA sequencing
ggraham/autoconf-archive
A mirror of the GNU Autoconf Archive, a collection of more than 500 macros for GNU Autoconf that have been contributed as free software by friendly supporters of the cause from all over the Internet.
ggraham/bax2bam
Convert legacy PacBio Bax.H5, Bas.H5, and Ccs.H5 files to the new PacBio BAM format
ggraham/bax2bam2
ggraham/blasr_libcpp
ggraham/MACS
MACS -- Model-based Analysis of ChIP-Seq
ggraham/pbbam
PacBio BAM C++ library
ggraham/BBHash
Bloom-filter based minimal perfect hash function library
ggraham/bpRNA
bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
ggraham/bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
ggraham/cuttlefish
Building the compacted de Bruijn graph efficiently from references or reads.
ggraham/deepTools
Tools to process and analyze deep sequencing data.
ggraham/fermi-lite
Standalone C library for assembling Illumina short reads in small regions
ggraham/fermi2
ggraham/G4Boost
ggraham/ggh4x
ggplot extension: options for tailored facets, multiple colourscales and miscellaneous
ggraham/GraphAligner
ggraham/Griffin
A flexible framework for nucleosome profiling of cell-free DNA
ggraham/hisat2
Graph-based alignment (Hierarchical Graph FM index) (SIMDe)
ggraham/KMC
Fast and frugal disk based k-mer counter
ggraham/memes
An R interface to the MEME Suite
ggraham/MEMfinder
ggraham/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
ggraham/nim-lapper
fast easy interval overlapping for nim-lang
ggraham/nimAvxFm
ggraham/paragraph
Graph realignment tools for structural variants
ggraham/pbcopper
Core C++ library for data structures, algorithms, and utilities
ggraham/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
ggraham/wensn
Python library to read the Wensn WS1361 Sound Pressure Level Meter over USB (on the Raspberry Pi)
ggraham/WiggleTools
Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency