ggseg/ggsegGlasser

ggsegGlasser

This repository contains an R package with atlas data for ggseg and ggseg3d for the Glasser parcellation for HPC.

Glasser et al. (2016) Nature, volume 536, pages 171–178 pubmed

Installation

We recommend installing the ggseg-atlases through the ggseg r-universe:

# Enable this universe
options(repos = c(
    ggseg = 'https://ggseg.r-universe.dev',
    CRAN = 'https://cloud.r-project.org'))

# Install some packages
install.packages('ggsegGlasser')

You can install the released version of ggsegGlasser from CRAN with:

install.packages("ggsegGlasser")

And the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("LCBC-UiO/ggsegGlasser")

Example

This is a basic example which shows you how to solve a common problem:

library(ggsegGlasser)

library(ggseg)
#> Warning: package 'ggseg' was built under R version 4.1.1
#> Loading required package: ggplot2
library(ggplot2)

plot(glasser) +
  theme(legend.position = "bottom",
        legend.text = element_text(size = 9)) +
  guides(fill = guide_legend(ncol = 7))

library(ggseg3d)
library(dplyr)

ggseg3d(atlas = glasser_3d) %>% 
  pan_camera("right lateral")

Please note that the ‘ggsegGlasser’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.