All the scripts used to benchmark HTSeq 2.0.
G Putri, S Anders, PT Pyl, JE Pimanda, F Zanini
Analysing high-throughput sequencing data with HTSeq 2.0
arXiv:2112.00939 (2021)
Folders are organised based on the various benchmarking type in Supplementary Figure 1:
- Supplementary Figure 1A: 8_cells
- Supplementary Figure 1B: 200_cells
- Supplementary Figure 1C: pbmc1k
Scripts that are applicable across multiple figures, i.e. to download FASTQs or generate star genome are placed in the main directory of the repository.