ghjghjghkimo

ghjghjghkimo's Stars

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k350

• swainasish/SpatialPrompt

  spatially aware scalable and accurate tool for spot deconvolution and clustering in spatial transcriptomics

  Language:Jupyter Notebook12

• ventolab/CellphoneDB

  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

  Language:Jupyter Notebook33453

• icbi-lab/infercnvpy

  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

  Language:Python13727

• cellgeni/schard

  reticulate-free single cell format conversion

  Language:R834

• FertigLab/pycogaps

  python API to the CoGAPS NMF package

  Language:Python166

• BayraktarLab/cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python32058