Pinned Repositories
aichemist-copier-template
Copier template as shown in the AIDD/AIChemist spring school.
AlphaLink2
AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
ARDEN
Artificial Reference Driven Estimation of false positives in NGS.
autoboost
An automated step-wise tuning package for gradient boosting.
bictools
bictools - a python package to perform variant detection on proteomic MS data using BICEPS
binding-ddg-predictor
open source repository
EvalMoodleExam
Simple script to evaluate Moodle Exams
ProteinMPNN
Code for the ProteinMPNN paper
pytrapment
pytrapment - making entrapment databases great again!
xiRT
Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides
gieses's Repositories
gieses/EvalMoodleExam
Simple script to evaluate Moodle Exams
gieses/ProteinMPNN
Code for the ProteinMPNN paper
gieses/pytrapment
pytrapment - making entrapment databases great again!
gieses/aichemist-copier-template
Copier template as shown in the AIDD/AIChemist spring school.
gieses/AlphaLink2
AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
gieses/ARDEN
Artificial Reference Driven Estimation of false positives in NGS.
gieses/autoboost
An automated step-wise tuning package for gradient boosting.
gieses/bictools
bictools - a python package to perform variant detection on proteomic MS data using BICEPS
gieses/binding-ddg-predictor
open source repository
gieses/bioconda-recipes
Conda recipes for the bioconda channel.
gieses/cddd
Implementation of the Paper "Learning Continuous and Data-Driven Molecular Descriptors by Translating Equivalent Chemical Representations" by Robin Winter, Floriane Montanari, Frank Noe and Djork-Arne Clevert.
gieses/xls2moodle
Creating moodle quizes from XLS files.
gieses/DeepDTA
gieses/DeepLearningTutorial
Deep Learning Tutorial for the Social Bioinformatics Workshop
gieses/DePART
DePART - Deep Learning for Predicting Anion Exchange Chromatography Retention Times.
gieses/grimer
gieses/ImmuneBuilder
Predict the structure of immune receptor proteins
gieses/ISMB2019_SingleCellTutorial
Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis
gieses/NoteBooks-Statistics-and-MachineLearning
Jupyter Notebooks from the old UnsupervisedLearning.com (RIP) machine learning and statistics blog
gieses/pdbx
pdbx is a parser module in python for structures of the protein data bank in the mmcif format
gieses/preprocessing
gieses/Python-for-Probability-Statistics-and-Machine-Learning
Jupyter Notebooks for Springer book "Python for Probability, Statistics, and Machine Learning"
gieses/python-package-template
Personal template for python packages.
gieses/RawiRTFinder
Workflow to find m/z of iRT Peptides for many raw files.
gieses/scripts
gieses/sgtorch
This is my description.
gieses/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
gieses/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
gieses/ThinkBayes
Code repository for Think Bayes.
gieses/ThinkStats2
Text and supporting code for Think Stats, 2nd Edition