Pinned Repositories
aichemist-copier-template
Copier template as shown in the AIDD/AIChemist spring school.
AlphaLink2
AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
ARDEN
Artificial Reference Driven Estimation of false positives in NGS.
autoboost
An automated step-wise tuning package for gradient boosting.
bictools
bictools - a python package to perform variant detection on proteomic MS data using BICEPS
BindCraft
User friendly and accurate binder design pipeline
EvalMoodleExam
Simple script to evaluate Moodle Exams
ProteinMPNN
Code for the ProteinMPNN paper
pytrapment
pytrapment - making entrapment databases great again!
xiRT
Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides
gieses's Repositories
gieses/EvalMoodleExam
Simple script to evaluate Moodle Exams
gieses/ProteinMPNN
Code for the ProteinMPNN paper
gieses/pytrapment
pytrapment - making entrapment databases great again!
gieses/aichemist-copier-template
Copier template as shown in the AIDD/AIChemist spring school.
gieses/AlphaLink2
AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
gieses/autoboost
An automated step-wise tuning package for gradient boosting.
gieses/BindCraft
User friendly and accurate binder design pipeline
gieses/binding-ddg-predictor
open source repository
gieses/bioconda-recipes
Conda recipes for the bioconda channel.
gieses/cddd
Implementation of the Paper "Learning Continuous and Data-Driven Molecular Descriptors by Translating Equivalent Chemical Representations" by Robin Winter, Floriane Montanari, Frank Noe and Djork-Arne Clevert.
gieses/xls2moodle
Creating moodle quizes from XLS files.
gieses/DeepDTA
gieses/DePART
DePART - Deep Learning for Predicting Anion Exchange Chromatography Retention Times.
gieses/GearBind
Pretrainable geometric graph neural network for antibody affinity maturation
gieses/grimer
gieses/ImmuneBuilder
Predict the structure of immune receptor proteins
gieses/ISMB2019_SingleCellTutorial
Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis
gieses/LigandMPNN
gieses/NoteBooks-Statistics-and-MachineLearning
Jupyter Notebooks from the old UnsupervisedLearning.com (RIP) machine learning and statistics blog
gieses/PD-1_Fab_Diffusion
PD-1 Targeted Antibody Discovery Using AI Protein Diffusion
gieses/pdbx
pdbx is a parser module in python for structures of the protein data bank in the mmcif format
gieses/preprocessing
gieses/python-package-template
Personal template for python packages.
gieses/RawiRTFinder
Workflow to find m/z of iRT Peptides for many raw files.
gieses/Sapiens
Sapiens is a human antibody language model based on BERT.
gieses/scripts
gieses/sgtorch
This is my description.
gieses/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
gieses/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
gieses/ThinkStats2
Text and supporting code for Think Stats, 2nd Edition