Pinned Repositories
bamnostic
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
bumblebee
Nanopore Basecalling
cc-backend
Backend for ClusterCockpit Monitoring Framework
collectd
The system statistics collection daemon. Please send Pull Requests here!
CoreFreq
CoreFreq is a CPU monitoring software designed for the 64-bits Processors.
nanopype
Snakemake pipelines for nanopore sequencing data archiving and processing
RepeatHMM
a hidden Markov model to infer simple repeats from genome sequences
selectION
Rapid linking of long reads to a reference genome
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
STRique
Nanopore raw signal repeat detection pipeline
giesselmann's Repositories
giesselmann/nanopype
Snakemake pipelines for nanopore sequencing data archiving and processing
giesselmann/STRique
Nanopore raw signal repeat detection pipeline
giesselmann/selectION
Rapid linking of long reads to a reference genome
giesselmann/bumblebee
Nanopore Basecalling
giesselmann/RepeatHMM
a hidden Markov model to infer simple repeats from genome sequences
giesselmann/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
giesselmann/bamnostic
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
giesselmann/cc-backend
Backend for ClusterCockpit Monitoring Framework
giesselmann/collectd
The system statistics collection daemon. Please send Pull Requests here!
giesselmann/CoreFreq
CoreFreq is a CPU monitoring software designed for the 64-bits Processors.
giesselmann/dissertation
giesselmann/keras-transformer
Keras library for building (Universal) Transformers, facilitating BERT and GPT models
giesselmann/mqtt2prometheus
MQTT to Prometheus gateway
giesselmann/nanoscp
Package and export MinION fast5 reads to network or remote location
giesselmann/parasail
Pairwise Sequence Alignment Library
giesselmann/parasail-python
Python bindings for the parasail C library.
giesselmann/pybam
Very simple, pure python, BAM file reader
giesselmann/reformer-pytorch
Reformer, the efficient Transformer, in Pytorch
giesselmann/scholar
literatur research
giesselmann/seqan
SeqAn's official repository.
giesselmann/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
giesselmann/tensor2tensor
Library of deep learning models and datasets designed to make deep learning more accessible and accelerate ML research.
giesselmann/vbz_compression
VBZ compression plugin for nanopore signal data