Pinned Repositories
ahocorasick
Fast string searching in various languages (Clojure, C++)
BioMart-Client
Clojure library for querying BioMart unRESTful web services
factor-graph
Belief propagation over factor graphs in directed & undirected PGMs
fun
Collection of small programs for fun & learning
GenomicRegions.jl
Julia package for handling sets of genomic regions, with in-memory and on-disk indexing capabilities.
GOGraph
.NET library for finding shortest paths in Gene Ontology.
gseconvert
Constructs and preprocesses a gene expression matrix from raw GSEs for use in meta-analyses
mdbread
Cross-platform Python reader for MS Access files
nlptk
NLP utilities (NER, parsers, corpus readers), wrapped in Clojure.
pkgbuild
Arch Linux PKGBUILDs, mostly for bioinformatics-related programs.
gilesc's Repositories
gilesc/mdbread
Cross-platform Python reader for MS Access files
gilesc/pkgbuild
Arch Linux PKGBUILDs, mostly for bioinformatics-related programs.
gilesc/GenomicRegions.jl
Julia package for handling sets of genomic regions, with in-memory and on-disk indexing capabilities.
gilesc/h5df
Library and CLI for storing numeric data frames in HDF5
gilesc/mrat
Methylated region analysis tool
gilesc/pcor
Parallel computation of all-vs-all Pearson correlations
gilesc/PostgreSQL.jl
PostgreSQL DBI driver
gilesc/pubmed-elasticsearch
gilesc/repeatseq
Accurate microsatellite genotypes from high-throughput resequencing data
gilesc/scet
Significantly Co-occurring Entities in Text
gilesc/ablateit-docker
gilesc/AhoCorasick.jl
Julia implementation of the Aho-Corasick algorithm for fast string searching.
gilesc/alpaca-lora
Instruct-tune LLaMA on consumer hardware
gilesc/BioTK
Bioinformatics toolkit for handling large matrices, expression analysis, and more -- CLI plus C++ and Python libraries
gilesc/ci-workshop
R/Bioconductor cancer informatics workshop at Rajiv Gandhi Centre in January 2013
gilesc/cruzdb
python access to UCSC genomes database
gilesc/DataFrames.jl
library for working with tabular data in Julia
gilesc/docker
gilesc/finetune-study
Comprehensive analysis of difference in performance of QLora, Lora, and Full Finetunes.
gilesc/genome_runner
gilesc/gpt4all
gpt4all: a chatbot trained on a massive collection of clean assistant data including code, stories and dialogue
gilesc/june
Local voice chatbot for engaging conversations, powered by Ollama, Hugging Face Transformers, and Coqui TTS Toolkit
gilesc/lobstr-code
lobSTR: a short tandem repeat profiler for next generation sequencing data
gilesc/ndbapi
Python API for the Nucleic Acid Database (http://ndbserver.rutgers.edu/)
gilesc/nixpkgs
Nix Packages collection
gilesc/py2cytoscape
Python utilities for Cytoscape and Cytoscape.js
gilesc/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
gilesc/python-nvd3
Python Wrapper for NVD3 - It's time for beautiful charts
gilesc/ref
A simple ncurses reference manager
gilesc/rust-leveldb
LevelDB binding for Rust.