use jython: jython -Dpython.path=tiny.jar viewresults.py comparisonX.out use hbondviewer: java -cp viewer.jar:translation.jar hbondviewer.Viewer structures/1fltV.pdb properties 1600 500 where "properties" is a text file with the H-bond parameters
use jython: jython -Dpython.path=tiny.jar viewresults.py comparisonX.out use hbondviewer: java -cp viewer.jar:translation.jar hbondviewer.Viewer structures/1fltV.pdb properties 1600 500 where "properties" is a text file with the H-bond parameters