ginnymortensen

PhD student in bioinformatics @ IUB. Research assistant under Prof. Haixu Tang.

Indiana University Bloomington

Pinned Repositories

burden
Burden monitor related scripts
Language:R0 3 42
ABC-Stat610
Project for STAT610 using approximate Bayesian computation
Language:R00
ADetectoLocum
ADetectoLocum: Harnessing Locally Deployable LLMs for Early Alzheimer's Disease Detection Through Voice Analysis
Language:Jupyter Notebook00
bghandbook
Handbook for Brendel Group students, postdocs, and staff
Language:Python00
CaDoD
Cats vs. Dogs for Applied Machine Learning
Language:Jupyter Notebook00
expression-simulation
Simulate cellular resource allocations with varying transcriptional feature strengths.
Language:Jupyter Notebook0 1 00
genome-assembly
Pipeline to assemble and annotate genomes; algorithms to align sequences.
Language:Python00
MGPipe
Shotgun metagenomics pipeline to process raw Illumina paired-end reads into usable microbiome data, suitable for Phyloseq postprocessing.
Language:Shell00
miRilizer
Web-hosted application to visualize the mRNA-miRNA interactome
Language:R0 1 00
sc-seq
Explore sc-RNA and ATAC sequencing data using machine learning methods.
Language:Jupyter Notebook00

ginnymortensen/ABC-Stat610
Project for STAT610 using approximate Bayesian computation
Language:R00
ginnymortensen/ADetectoLocum
ADetectoLocum: Harnessing Locally Deployable LLMs for Early Alzheimer's Disease Detection Through Voice Analysis
Language:Jupyter Notebook00
ginnymortensen/bghandbook
Handbook for Brendel Group students, postdocs, and staff
Language:Python00
ginnymortensen/CaDoD
Cats vs. Dogs for Applied Machine Learning
Language:Jupyter Notebook00
ginnymortensen/expression-simulation
Simulate cellular resource allocations with varying transcriptional feature strengths.
Language:Jupyter Notebook0 1 00
ginnymortensen/genome-assembly
Pipeline to assemble and annotate genomes; algorithms to align sequences.
Language:Python00
ginnymortensen/MGPipe
Shotgun metagenomics pipeline to process raw Illumina paired-end reads into usable microbiome data, suitable for Phyloseq postprocessing.
Language:Shell00
ginnymortensen/miRilizer
Web-hosted application to visualize the mRNA-miRNA interactome
Language:R0 1 00
ginnymortensen/sc-seq
Explore sc-RNA and ATAC sequencing data using machine learning methods.
Language:Jupyter Notebook00
ginnymortensen/multi-qPCR
Scripts to clarify ambiguous multiplex qPCR signals and find thresholds for automated result calling.
Language:HTML
ginnymortensen/stats_temp
temporary repo
Language:R