giovannarosone

Pinned Repositories

• BCR_LCP_GSA

  Multi-string eBWT/LCP/GSA computation

  Language:C++51

• FASTQcompression

  FASTQcompression (Compressor of FASTQ files)

  Language:C++32

• cLCP-mACS

  Efficient lightweight strategy to solve the multi-string Average Common Substring (ACS) problem, that consists in the pairwise comparison of a single string against a collection of m strings simultaneously, in order to obtain m ACS induced distances.

  Language:C++20

• BCR_QS_decode

  eBWT --> FastQ, FASTA, text

  Language:C++10

• bwt2lcp

  Compute the LCP array from the BWT of a set of DNA strings.

  Language:C++10

• cLCP-mACS_parallel

  Efficient parallel construction of the colored longest common prefix array

  Language:C++00

• ebwt2InDel

  ebwt2InDel: find SNPs and InDels from the BWT of a fasta read set

  Language:C++00

• ebwt2snp

  Positional clustering of the extended Burrows-Wheeler transform

  Language:C++00

• EDS-BWT

  The Burrows-Wheeler transform of an elastic-degenerate string

  Language:C++02

• r-index

  An optimal space run-length Burrows-Wheeler transform full-text index

  Language:C++00

giovannarosone's Repositories