Pinned Repositories
bioinformatics_scripts
General-use bioinformatics scripts
cdseq
Extract coding sequence(s) from a genome and annotation file
climail
Send an email from the command-line
fasterq_dump
A (faster) wrapper for NCBI's fastq-dump with some convenience functions
intronIC
Retrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type) using a support vector-machine model.
jgi-query
A simple command-line tool to download data from Joint Genome Institute databases
palign
Parallelized sequence alignment using BLAST or DIAMOND
reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
resume
My résumé
transeq
Translate nucleotide --> amino acid sequence
glarue's Repositories
glarue/jgi-query
A simple command-line tool to download data from Joint Genome Institute databases
glarue/reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
glarue/intronIC
Retrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type) using a support vector-machine model.
glarue/bioinformatics_scripts
General-use bioinformatics scripts
glarue/fasterq_dump
A (faster) wrapper for NCBI's fastq-dump with some convenience functions
glarue/palign
Parallelized sequence alignment using BLAST or DIAMOND
glarue/cdseq
Extract coding sequence(s) from a genome and annotation file
glarue/climail
Send an email from the command-line
glarue/resume
My résumé
glarue/transeq
Translate nucleotide --> amino acid sequence
glarue/biogl
A collection of (semi) useful small bioinformatics modules
glarue/code_clinic
UCM code clinic tutorials and associated files
glarue/faseq
Retrieves one or more sub-sequences from a FASTA file based on location, coordinate and strand information.
glarue/homeasssitant-schlage
Schlage Encode implementation for Home Assistant
glarue/minor_introns
Plots and figures associated with https://doi.org/10.1093/nar/gkad797
glarue/notify
Send an email upon completion of a command-line command.
glarue/oneliners
Useful bash one-liners for bioinformatics.
glarue/randl
Retrieve random subsets of lines from a file
glarue/revcomp
Reverse-complement a DNA/RNA sequence
glarue/tophits
Get the specified number of top BLAST hits from a BLAST results file
glarue/unifi-ddns
Cloudflare DDNS (Dynamic DNS) support for UniFi OS