Pinned Repositories
docker-batman
Provides a Docker container for BATMAN, used for the Bayesian analysis of 1D-NMR data
GraphOmics
Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.
ms2ldaviz
Substructural discovery in untargeted metabolomics data using LDA topic modelling.
PALS
Ranking metabolite (and other omics sets) by their activity levels via SVD
pyBatman
A pipeline to infer metabolite concentrations from 1D NMR data using BATMAN (Bayesian AuTomated Metabolite Analyser for NMR)
pyMultiOmics
Python toolbox for multi-omics data mapping and analysis
pyMultiOmics-data
Test data for pyMultiOmics notebooks
shinyKGode
An interactive web application for gradient matching methods.
vimms
A programmable and modular LC/MS simulator in Python
vimms-data
A repo to store data needed by ViMMS demo and example notebooks
glasgowcompbio's Repositories
glasgowcompbio/pyMultiOmics
Python toolbox for multi-omics data mapping and analysis
glasgowcompbio/vimms
A programmable and modular LC/MS simulator in Python
glasgowcompbio/GraphOmics
Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.
glasgowcompbio/ms2ldaviz
Substructural discovery in untargeted metabolomics data using LDA topic modelling.
glasgowcompbio/PALS
Ranking metabolite (and other omics sets) by their activity levels via SVD
glasgowcompbio/shinyKGode
An interactive web application for gradient matching methods.
glasgowcompbio/pyBatman
A pipeline to infer metabolite concentrations from 1D NMR data using BATMAN (Bayesian AuTomated Metabolite Analyser for NMR)
glasgowcompbio/docker-batman
Provides a Docker container for BATMAN, used for the Bayesian analysis of 1D-NMR data
glasgowcompbio/FrAnK
A Fragment Annotation Kit for Mass Spectral Peaks
glasgowcompbio/LiKInS
glasgowcompbio/pyMultiOmics-data
Test data for pyMultiOmics notebooks
glasgowcompbio/pySubstructures
A Python package to perform unsupervised discoveries of motifs from tandem mass spectrometry data.
glasgowcompbio/vimms-data
A repo to store data needed by ViMMS demo and example notebooks
glasgowcompbio/vimms-gym
A Gym environment to learn mass spectrometry data acquisition using reinforcement learning
glasgowcompbio/MetaboCraft
A Minecraft plugin for metabolomics
glasgowcompbio/pyBasket
Incorporating omics clustering for Bayesian basket trial design