Expand an EAPX or QEA File

Installation:

Pre-requisites (EAPX)

Install mdbtools
```
$ brew install mdbtools
```

Install

Install poetry

curl -sSL https://install.python-poetry.org | python3 -

Install the environment
```
$ poetry shell
$ poetry install
```

Running

Convert the output location (general EAPX)
- With an expanded EAPX file (see below)
```
$ poetry run expand input/usdm output
```
- With a QEA file
```
$ poetry run expand input/usdm.qea output
```
Convert the output location (USDM EAPX/QEA)
- For the USDM content we can merge (depending on formatting issues, etc) the definitions/codelists from the CT
```
$ poetry run expand --usdm --usdm-ct input/USDM_CT.xlsx input/usdm_main
```

Output Types

XLSX

A Excel formatted spreadsheet will be generated for the model, normalising the entities and attributes into a tabular format.

LinkML

A LinkML formatted YAML file will be generated for the model (Still a WIP).

Helpers

Pulling a version of the CDISC USDM

To pull a version of the USDM EAP file (and CT)

It takes an optional argument to point at the branch; if not specified it will pull the main branch; for example to retrieve the current version for sprint-9 run it as follows:

$ /bin/bash scripts/pull_usdm.bash sprint-9

Expanding a EAPX file

Use the following script to expand an eapx file shell $ scripts/expand.bash USDM_UML.eapx usdm It will generate a folder in the input directory named usdm with the expanded content (JSON files)

glow-mdsol/eapexpand