This repository is a set of scripts and output to build on top of the excellent work by JozefAerts.
The input is taken in and a few patches are applied to the content and it is split out by patient.
This can then be augmented elements on an adhoc basis:
- Current implementation is using the SV dataset to generate encounters
- Install Poetry (https://python-poetry.org/docs/#installation)
- Clone the repository
git clone https://github.com/glow-mdsol/soa-bridge-match
- Install the requirements
poetry install
To regenerate the files, run the following command (in the upstream folder):
- Patch the current implementation and split the content into patients
python patch_json.py LZZT_FHIR_Bundle_10_Patients_All_Resources.json
- Merge in the visit information (it will scan all the json files in the directory)
python add_visits.py subjects