Pinned Repositories
contributing_to_r_lesson
fastdigest
R package for using Bob Jenkin's streaming SpookyHash algorithm in-place within R's serialization machinery. Generates 128bit digests of R objects without creation of full serialized copies.
genbankr
gRAN
Repository-based tools for reproducibilty at the system-wide installation and individual analysis levels for R
histry
Enhanced code history tracking for R sessions and dynamic documents.
RBrowserPlugin
Firefox Extension and R package to embed R in Firefox, including bi-directional communcation between javascript and R
rpath
An R package implementing xpath-like functionality for querying R objects
S4Coffee
S4Coffee is a roxygen-like framework for declaring classes, generics, and methods for the S4 object system in R via comments and then automatically generating the code that implements them.
switchr
An R package for managing and seamlessly switching between sets of installed R packages.
trackr
The trackr R package enables Discoverability and enhances reproducibility by generating automatic provenance and semantically descriptive metadata for R plots and objects.
gmbecker's Repositories
gmbecker/switchrGist
A small plugin for the switchr R package allowing users to publish manifests as gists
gmbecker/roprov
The roprov package provides infrastructure for "provenance" tables linking the values of in-memory R objects together based on their lineage/dependency.
gmbecker/histry
Enhanced code history tracking for R sessions and dynamic documents.
gmbecker/gran-docker
gmbecker/RCacheSuite
A suite of caching tools for use in R, particularly when processing dynamic documents
gmbecker/fastdigest
R package for using Bob Jenkin's streaming SpookyHash algorithm in-place within R's serialization machinery. Generates 128bit digests of R objects without creation of full serialized copies.
gmbecker/rentrez
talk with NCBI entrez using R
gmbecker/strict
Make R a little bit stricter
gmbecker/rsolr
An idiomatic R interface to Solr
gmbecker/S4Coffee
S4Coffee is a roxygen-like framework for declaring classes, generics, and methods for the S4 object system in R via comments and then automatically generating the code that implements them.
gmbecker/rmongodb
R driver for MongoDB
gmbecker/knitr
A general-purpose tool for dynamic report generation in R
gmbecker/roxygen
gmbecker/testsysfile
A throw-away R package for testing some stuff
gmbecker/CodeAnalysis
Tools for static analysis of R code
gmbecker/BatchJobs
BatchJobs: Batch computing with R
gmbecker/VariantTools
gmbecker/rocker-versioned
Run earlier versions of R using docker
gmbecker/EnsemblRest
R package for accessing the Ensembl REST api
gmbecker/DynDocModel
Document Model for Non-Linear Dynamic Documents (in R)
gmbecker/Rook
A web server interface for R
gmbecker/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
gmbecker/bibTools
The bibTools R package provides a number of tools for dealing with bibliographic information in R, including transforming between formats, querying entries present in a document, and even verifying the contents of bibliographic entries and correcting mistakes.
gmbecker/ComplexDocuments
A repository for examples and discussion of complex, non-sequential documents in various formats
gmbecker/evaluate
A version of eval for R that returns more information about what happened
gmbecker/pander
An R pandoc writer
gmbecker/RBrowserPlugin
Firefox Extension and R package to embed R in Firefox, including bi-directional communcation between javascript and R
gmbecker/shiny
Easy interactive web applications with R
gmbecker/VCF_projects
gmbecker/peg-markdown
An implementation of markdown in C, using a PEG grammar