Read a fasta file and generate a fingerprint based on triad of aminoacids
- makeprotdb.py: Create a database of triads
- protodes.py: Build descriptors based on triads features
create a script mkdb.x
mkdb.x
python3 ~/Nextcloud/Software/ProtDesc/src/makeprotdb.py ${1} ${1}.db
find . -name "*.fasta" | xargs -n 1 -P 12 -I {} bash mkdb.x {}
create a script mkdesc.x
python3 /home/marco/Nextcloud/Software/ProtDesc/src/protdesc.py ${1} /home/marco/Nextcloud/Software/ProtDesc/src/db ${1}.desc.csv
find . -name "*.fasta" | xargs -n 1 -P 12 -I {} bash mkdesc.x {}
Author: Giuseppe Marco Randazzo
Mantainer: Giuseppe Marco Randazzo, gmrandazzo@gmail.com
ProtDesc is distributed under GPLv3 license. For more details please read the file "LICENSE" or go to "http://www.gnu.org/licenses/gpl-3.0.html"